Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5 132 5e-26 >seq5 Length=4166812 Score = 132 bits (146), Expect = 5e-26 Identities = 212/301 (70%), Gaps = 5/301 (2%) Strand=Plus/Minus Query 11918 CTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCC 11977 ||||| |||| |||||||||||||| || || |||||||| ||||||||||||| ||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 11978 TCTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATC 12036 || | || || || |||| || | | || | || || || ||||||||||| Sbjct 871420 TCAGGTATTTGAACTTCAGACATGAACT-TGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 12037 ACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTT 12096 | | || ||||| || | || || || ||||||| ||| | | | | ||||| Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTT 871302 Query 12097 A---TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGC 12153 | ||||| || | | ||| ||| ||||| | ||||| | |||||||| ||||| Sbjct 871301 ATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGC 871242 Query 12154 CACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 | ||| | ||||||||| ||||| ||||| ||| ||||| ||||| | ||| || || Sbjct 871241 CTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCT 871182 Query 12214 A 12214 | Sbjct 871181 A 871181 Score = 114 bits (126), Expect = 1e-20 Identities = 205/295 (69%), Gaps = 6/295 (2%) Strand=Plus/Minus Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||| || ||||| | ||||||||| | ||| || | || || ||||| || | Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAG--CAGCAAATGAACCAGAAAAG 11746 || ||||| | || || || || | |||||| || | ||| || | |||| || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACT--ACCACTGAAA 871739 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || || || || || ||||| ||||| | | ||| || | |||| | | | Sbjct 871738 AAGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGTA 871679 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||| | ||||| |||||||| || ||||| ||| || ||||| || || ||| Sbjct 871678 ATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTA 871619 Query 11867 AATAAATGCATTTTTTCTATATT-ATCTCTTACATATGTATCTATTAATAAACTA 11920 ||||| | ||||||| || | || | | | ||||||||| |||||||||||| Sbjct 871618 AATAATACCTTTTTTTC-ATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524653586000