Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5 170 3e-37 seq3 111 2e-19 >seq5 Length=4166812 Score = 170 bits (188), Expect = 3e-37 Identities = 221/302 (73%), Gaps = 5/302 (2%) Strand=Plus/Minus Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 ||||| |||| |||||||| ||||||||||| |||||||| || ||||||||||| || Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA-TTTTCATTCACTATTCCGTC 36564 || | || || ||||| | ||| | | | || || ||||| || || || || || Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 36565 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTT 36624 | ||| || ||||| |||||||||| || ||||| | ||| || | | ||| Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTT 871302 Query 36625 ATTC---CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGC 36681 |||| || || |||| ||| | | | ||| | ||||| |||||||||| ||| Sbjct 871301 ATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGC 871242 Query 36682 CTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCT 36741 |||||||||||||||||||||||| || || ||||| |||||| || | ||||||||| Sbjct 871241 CTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCT 871182 Query 36742 AT 36743 || Sbjct 871181 AT 871180 Score = 122 bits (134), Expect = 1e-22 Identities = 209/296 (71%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| || || ||||| || ||||| ||||| | ||| || || ||||||||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGATCCAGAAAAGA 36275 || ||||| || |||||||| || |||||||| || | || ||| | ||| || | Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTA-CCACTGAAAA 871738 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACTGTCATG 36333 | || ||||| || || ||||| || | | | || || | || | | || Sbjct 871737 AGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGA--GTTGGT 871680 Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393 ||||| | |||||| || || || || |||||||| || || || || || ||||| Sbjct 871679 AATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATT 871620 Query 36394 AAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 ||| | ||| |||||||||| || ||||| |||||||||||| || | |||| Sbjct 871619 AAATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 111 bits (122), Expect = 2e-19 Identities = 559/876 (64%), Gaps = 21/876 (2%) Strand=Plus/Plus Query 65736 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 65795 |||| ||||| || || ||||||||||| || | || | || || || ||||| Sbjct 2512999 GCAATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGAAGTGTACTGGATAATCTCG 2513058 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 || || ||||| || | || || || | || | ||| || ||||| || || Sbjct 2513059 GTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAA 2513118 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 || ||||| || || ||| |||| |||||||| || || || || || || || || | Sbjct 2513119 GCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAAC 2513178 Query 65916 CAGACGACTCGAGCCTTTA-----TTATAGATTTGT--ATCTCTTTTCTCTTTCGTATAG 65968 |||| | || | ||||| | ||| | | | | | | ||| | | | || Sbjct 2513179 CAGAGGTCTTGTGCCTTGACCACCTTACGGGCTAATCCAGGAGTCTGCTCGTAGGAA-AG 2513237 Query 65969 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGG 66028 ||| | | ||| ||||| ||| || | || | ||||||||||| ||| | || Sbjct 2513238 -GTAGAGA-TCGCG-GAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGG 2513294 Query 66029 ACACATCAACGACCACTCTCCGTCATCC--TTC-ACTCGTTTCATAAAGAGATCAGGAAT 66085 ||| | ||||||||||| || ||| | ||| || |||| |||||||||||| | | Sbjct 2513295 ACAAAACAACGACCACT---CGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATAC 2513351 Query 66086 CCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 66145 ||| || || ||| | || | || | || || || || ||||||||||| Sbjct 2513352 CCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAG 2513411 Query 66146 ATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205 ||||| ||| | | ||| || | ||||| ||||| | ||| | || | | || Sbjct 2513412 GTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTT 2513471 Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 | ||| ||| || || || | || | || || | ||| | || | | |||||| Sbjct 2513472 TCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGG 2513531 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 | | ||| ||| ||||| ||||| || ||||||| || ||||| || || Sbjct 2513532 CACCAAACCGTTGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTT 2513591 Query 66326 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 | | | ||| || || || || | || || || | || ||| | || | ||| Sbjct 2513592 GTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGT 2513651 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 66445 ||||| || || || || || ||| |||| | | || ||||| || ||||||| Sbjct 2513652 GTCATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTT- 2513710 Query 66446 GTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 66504 | | ||| | || || || ||||| | ||| || | || |||||||| | | | Sbjct 2513711 GAGGCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTTG 2513770 Query 66505 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCG 66563 | | | | | |||||| ||||| || | ||| || || || | || || || | || | Sbjct 2513771 ACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCG-TGGATACCAAGTGAG 2513829 Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 66599 |||||||| |||| ||| || || | ||| | |||| Sbjct 2513830 ACACGCATCAACAAGTGTTGGGGACGTTCGATGATC 2513865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172594321000