Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq21 105 7e-18 seq24 95.1 1e-14 >seq21 Length=1919465 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||||||||| ||||| || || || |||||||||||| || ||| Sbjct 1444629 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCGAGCTGCTTGCCA 1444570 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||| ||||| || || || ||||| ||||| ||| || || Sbjct 1444569 GCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTG 1444510 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||| || |||| || | |||||||||||||| || Sbjct 1444509 ACATTCTCGATAGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTGCCGGTCAATGTC 1444450 Query 139748 TTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 1444449 TTGACAAAGATTTGCATA 1444432 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||| ||||| || ||| | || || |||||||||||| || ||| Sbjct 1445313 GTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCGAGCTGCTTTCCA 1445254 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||| ||||| || || || ||||| ||||| ||| || ||| Sbjct 1445253 GCAAAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTTTTG 1445194 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | ||| || |||| || | ||||| || || || || Sbjct 1445193 ACATTTTCAATGGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTACCAGTTAATGTC 1445134 Query 139748 TTTACGAATATTTGCATA 139765 ||||| || ||||||||| Sbjct 1445133 TTTACAAAGATTTGCATA 1445116 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| |||||||||||||| ||| Sbjct 1352150 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGAT 1352091 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||| | || || |||||| |||| |||||||| ||||| || || Sbjct 1352090 AAAGTGCGACCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 1352031 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | |||| | ||| | || || | || || Sbjct 1352030 ATACCTTCCTTGTC-TTGAATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAAC 1351972 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||| || || | |||||||| || |||||||| Sbjct 1351971 CTCCAAGGTGATGGTCTTACCAGTAAGAGTTTTTACAAAAATTTGCAT 1351924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || |||||||||||||| ||| || || || |||||| | || || ||| Sbjct 1352804 GTTGATTCCTTTTGAATGTTATAGTCGGACAAAGTTCTTCCGTCTTCTAATTGCTTTCCA 1352745 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| |||||||| ||||| || || || ||||| ||||| ||| | || | || Sbjct 1352744 GCAAAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTC-TTGAATCTTGGCCTT 1352686 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| || || |||| || | ||||| ||||| || || Sbjct 1352685 GACATTCTCGATAGTGTCGGATCCTTCAACTTCAAGAGTGATGGTCTTACCGGTTAATGT 1352626 Query 139747 TTTTACGAATATTTGCATA 139765 ||||| || ||||||||| Sbjct 1352625 CTTTACAAAGATTTGCATA 1352607 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||||||||| ||||| || || || |||||| | |||||||| Sbjct 1444401 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTGTTTACCG 1444342 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | || |||||||| ||||| || || || ||||| ||||| ||| || || Sbjct 1444341 GCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTCTTG 1444282 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||| | || ||||| | ||| | ||||| || || || ||| Sbjct 1444281 ACATTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTACCAGTTAAAGTT 1444222 Query 139748 TTTACGAATATTTGCAT 139764 ||||| || |||||||| Sbjct 1444221 TTTACAAAAATTTGCAT 1444205 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || |||||||||||||| ||| || || || |||||| | |||||||| Sbjct 1352576 GTTGATTCCTTTTGAATGTTATAGTCGGACAAAGTTCTTCCGTCTTCTAATTGTTTACCG 1352517 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | || |||||||| ||||| || || || ||||| ||||| ||| | || | || Sbjct 1352516 GCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTC-TTGAATCTTGGCCTT 1352458 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | ||| | || |||| ||||| || | || | || || || || | || Sbjct 1352457 TACGTTTTCAATGGTATCGGATCCTTCCACTTCCAAAGTGATAGTTTTACCAGTGAGGGT 1352398 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 1352397 CTTGACGAAAATTTGCATA 1352379 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||||||||| ||||| || || || |||||| | |||||||| Sbjct 1445085 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTGTTTACCG 1445026 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 ||| | || |||||||| ||||| || || || ||||| ||||| ||| | || || || Sbjct 1445025 GCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTC-TTGAATCTTGGTCTT 1444967 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | ||| || |||| || | ||||| || || | || Sbjct 1444966 GACATTCTCAATGGTGTCAGATCCCTCAACTTCAAGAGTGATGGTCTTACCAGTGAGGGT 1444907 Query 139747 TTTTACGAATATTTGCATA 139765 ||||| || ||||||||| Sbjct 1444906 CTTTACAAAGATTTGCATA 1444888 >seq24 Length=3408800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || ||||| ||||| |||||| | || | |||||| | |||||||| Sbjct 192441 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCTAATTGTTTACCG 192500 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||| ||||| || || || ||||| ||||| ||| | || || || Sbjct 192501 GCAAAGATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCT-TGAATCTTGGTCTT 192559 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | ||||| | || || || | ||| | |||||||||||||| || Sbjct 192560 GACATTTTCGATAGTGTCAGAACCTTCGACTTCCAAGGTGATGGTCTTGCCGGTCAATGT 192619 Query 139747 TTTTACGAATATTTGCATA 139765 || || || ||||||||| Sbjct 192620 CTTGACAAAGATTTGCATA 192638 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || ||||||||||| ||||| | || || || || | |||||||| Sbjct 191984 GTGGATTCCTTTTGAATGTTGTAATCCGAGAGGGTTCTGCCATCCTCTAATTGTTTACCG 192043 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||| ||||| || || || ||||| ||||| ||| | || || || Sbjct 192044 GCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTC-TTGAATCTTGGTCTT 192102 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | ||| | ||||||| || || |||| || | ||||| || ||||| || Sbjct 192103 AACGTTTTCAATGGTGTCGGATCCTTCGACTTCAAGAGTGATGGTCTTACCAGTCAATGT 192162 Query 139747 TTTTACGAATATTTGCATA 139765 || || || || |||||| Sbjct 192163 CTTGACAAAGATCTGCATA 192181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063844980000