Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 174 2e-38 seq3 150 3e-31 >seq5 Length=4166812 Score = 174 bits (192), Expect = 2e-38 Identities = 223/303 (74%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 ||||| |||| |||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 50308 TCGGTAATCTGCACTTCTGTACA--AAATCGTTCAGCTAAATTTTCATTCACTATTCCGT 50365 || | || || ||||| | ||| || | | | || | ||||| || || || || | Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTG-GCAAGGTTTTCGTTGACAATACCAT 871363 Query 50366 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT 50425 || ||| || ||||| |||||||||| || ||||| || ||| ||| | | || Sbjct 871362 CAGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATT 871303 Query 50426 TATTC---CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 50482 ||||| || || |||| ||| | | | ||| | ||||| |||||||||| || Sbjct 871302 TATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTG 871243 Query 50483 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 50542 ||||||||||||||||||||||||| || || ||||| |||||||| | |||||||| Sbjct 871242 CCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATC 871183 Query 50543 TAT 50545 ||| Sbjct 871182 TAT 871180 Score = 138 bits (152), Expect = 2e-27 Identities = 215/298 (72%), Gaps = 12/298 (4%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| || || ||||| || ||||| ||||| | ||| || | ||||||||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGACC-CAGAAAAG 50076 || ||||| || |||||||| || |||||||| || | || ||| ||| | |||| Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAA-- 871739 Query 50077 AAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA--AC-TGGCGCTGTCA 50133 ||||| ||||| || |||||||| || || | | || || | || ||| | || | Sbjct 871738 AAGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGTA 871679 Query 50134 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 50193 ||||| | |||||| || || || || |||||||| || || ||||| || ||| Sbjct 871678 ---ATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCA 871622 Query 50194 TTAAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 ||||| | ||| |||||||||| || ||||| ||| ||||| || || | |||| Sbjct 871621 TTAAATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 150 bits (166), Expect = 3e-31 Identities = 1126/1802 (62%), Gaps = 42/1802 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| |||| ||| |||| ||||| || |||||||| || || || ||| Sbjct 2512081 GTGAATTGGATGGCGTCGGCAGCGGCACGAGTACGGAGGTAGTACATACCAGTCTTGAGA 2512140 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| |||||||||||||| || ||||||| | | | || || || ||| Sbjct 2512141 CCCTTCTTCCAGGCGTAGAAATGCATAGAGGTGAGTTTGGCAAAGTTTGGTTCGGCAATA 2512200 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 | || | || |||||||| ||||| ||||| || ||||| |||||||| | ||| Sbjct 2512201 AACACGTTGAACGACTGACTTTGGTCGATAAAGGCACCTCTGTCGGCAGCCATATCAATG 2512260 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 78956 | || ||| |||| |||||| | || || | ||| || | || || || | Sbjct 2512261 AGTGTACGTTGACGAATCTCCCAAGCCGACTTGTACAGCTCT-TTGAGGTCGTCGGGGAT 2512319 Query 78957 GT-TTGTA--TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 ||| | || || | || |||| | || || || ||||| || || | | Sbjct 2512320 ACCTTGGACGTTTTGTACCGACCCACGGTTAGCAATGATTTGGTTCTTCATTTCGGGAGT 2512379 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| || | | | | | || | ||| || || || ||| || || Sbjct 2512380 CCACAAACCAAGTGCCATGAGATCCTGGAGCAATTGCTTGTTGACGACGGTAAACTCGCC 2512439 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 | ||| || | || | |||||| || || || |||||||| | | ||||| || || Sbjct 2512440 GGCCAAGACCTTGCGCGAGTAAATGTTGCTAGTGTATGGTTCAAAACACTCATTGTTGCC 2512499 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | ||| || | || ||||| |||||||| ||||| || | || || | ||||| Sbjct 2512500 GAGAATCTGTGAGGTGGATGCTGTTGGCATGGGTGCGACGAGCAACGAGTTACGTAGACC 2512559 Query 79194 GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 || | ||| | ||| |||| |||| |||||| | |||| || |||| Sbjct 2512560 GTGTTTGACGATACGTTGTTTGAGAGCGGCCCAGTCCCAACGGGCAGATGGTTGGACATC 2512619 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| | ||| ||||||| ||||| | |||| || |||| | || || || || Sbjct 2512620 CCACATGTCAAATTGTAGGATACCTTGGGAAGCGGGCGAACCTGCAAAGGTCTCGTATGG 2512679 Query 79314 TCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAA 79373 || || ||||| |||| ||| || || | | | || || ||||||||| Sbjct 2512680 ACCGTCGCGCTCGGCCAATTGACACGATGCGTCAAGGGAAGCATAGTAGATGGTTTCGGC 2512739 Query 79374 AATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGG-ATAATTTAAGAGAATAA 79432 ||||| ||| ||||| | || || | |||||||| ||| || || ||| Sbjct 2512740 AATCTCCTTGTTGAGGACGGCGGCAGCTGGTGAGTCAAATGGCATACGGAGAGCGA-TAA 2512798 Query 79433 ACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTT 79492 | |||| || || ||||||| ||||| ||| | || | ||| | | | || ||| Sbjct 2512799 AGACGTCGGCCAAACCTTGAATTCCAATGCCGGTTGGACGATGACGCATGTTGGAACGAC 2512858 Query 79493 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC-TG-ACTAT 79550 ||||||| | || || ||||| || || || || ||||| || | || | | Sbjct 2512859 GAGCTTCTTCGACTGGGTAGAAATTACGGTCAATGATCTTGTTGAGGTTACGTGTAATGA 2512918 Query 79551 TAC-------TTTGACCACATCCTTTAGTTTGAGAAAATCAA------ATCGTCCATCTA 79597 ||| || | | | || || | | | || | | || | | | ||| Sbjct 2512919 TACGGGTGATTTCGGCGAGATGGTTATGGTCAAATGAAGCGACGGCCGATGG-CGAACTA 2512977 Query 79598 ----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 | |||||| | | || | ||||| || || ||||||||||| || | || Sbjct 2512978 CGCTTGACAAACTTTGGTAGAGCAATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCT 2513037 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 | || || || || || || ||||| || || | ||| || || | || | | Sbjct 2513038 GAAGTGTACTGGATAATCTCGGTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTT 2513097 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 || || ||||| || || || ||||| || || ||| | || |||||||| || || Sbjct 2513098 TGGTTGGACTTTTCATTGCAAGCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATT 2513157 Query 79774 TGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTA-----TTATAGACTTGT--A 79826 || || || || || || ||||| | || | ||||| | ||| | || | | Sbjct 2513158 TGCGAGTCGATGATGGCAAACCAGAGGTCTTGTGCCTTGACCACCTTACGGGCTAATCCA 2513217 Query 79827 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 | | ||| | | | || | || || ||||| ||| || | |||| | Sbjct 2513218 GGAGTCTGCTCGTAGGAAAGGTAGAGATCG-CG---GAACTTGTCGCCGTAGCAATCGGC 2513273 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 ||||||||| ||||| ||||| | |||||||||||| ||| | | || |||| Sbjct 2513274 CAATCCAGGAGCTTCGTTTGGACAAAACAACGACCACTCGGCATTCTGTTCGACACGTTC 2513333 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 |||||||||||| | | ||| || || ||| || || | || | ||| || || Sbjct 2513334 CATAAAGAGATCGGATACCCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTT 2513393 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || ||||||||||| ||||| ||| | | ||| || || ||||| ||||| | ||| Sbjct 2513394 ACCGTGGTTCTTTTTAAGGTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTA 2513453 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 | || | | ||| || ||| ||| || || || | || | || || | || Sbjct 2513454 GACAGCAAACGCACCCTTTCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTT 2513513 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 | | || | | |||||| | | ||| ||| ||||| ||||| || ||||||| Sbjct 2513514 AAACACACGTAGCATTGGCACCAAACCGTTGCTAGTACCGTTGGTTCCACGGATATAGGA 2513573 Query 80187 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || |||||| || || | | | ||| || || || || | || || || | Sbjct 2513574 TCGTGCGGCACGGATCTTGTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAG 2513633 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 || ||| | || | ||| ||||| || || || || || || |||| | | || Sbjct 2513634 GGCACATTGCTTGAGCGTGTCATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAG 2513693 Query 80307 AAAACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 80365 ||||| || ||||||| | | ||| | || || || ||||| | ||| || | || | Sbjct 2513694 GAAACAACTCGACATTT-GAGGCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCAT 2513752 Query 80366 GCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCAT 80424 ||||||| | | |||| | | | |||||| ||||| || | || || || || Sbjct 2513753 GCGTAAAGTAACGGTTTGACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCAC 2513812 Query 80425 TGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTA 80484 | || || || | | ||||||||| |||| ||| || || | ||| | |||| | | | Sbjct 2513813 CG-TGGATACCAAGTGAGACACGCATCAACAAGTGTTGGGGACGTTCGATGATCATATCA 2513871 Query 80485 TT 80486 || Sbjct 2513872 TT 2513873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268575541000