Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 >seq5 Length=4166812 Score = 111 bits (122), Expect = 2e-19 Identities = 207/300 (69%), Gaps = 13/300 (4%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| || ||||| || || || || | ||| || | ||||| ||||| || | Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTG--CAGCAAATGACCCGGAAAAG 13988 |||||||| | || || || || | |||||| || | ||| || | | | ||||| Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAA 871737 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 ||| || ||||| || ||||| |||| || ||||| ||||||| || ||| Sbjct 871736 GATA--CCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGAC---TTGGAGTTG 871682 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | |||||| | |||||| |||| |||||| || | | | || |||||||| ||| Sbjct 871681 GTAATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCA 871622 Query 14109 TTAAATAAATATTCCTTCTCTTTA---GTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 |||||||| | |||| | || | | | || ||| ||||||||||| | ||| ||| Sbjct 871621 TTAAATAA---TACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 Score = 102 bits (112), Expect = 8e-17 Identities = 205/302 (68%), Gaps = 9/302 (3%) Strand=Plus/Minus Query 14163 CTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCT 14222 ||||| ||||||| || || ||||| || || || ||||||||||| || ||||| ||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 || | ||| ||||| || || | ||| | ||||| || || ||||||||| Sbjct 871420 TCAGGTATTTGAACTTCAGACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATCA 871361 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAGT 14339 || || ||||| ||||||| || || |||||| || ||||||| || | | Sbjct 871360 GAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAG---TGACGTTCATTGTCATTCAAT 871304 Query 14340 TTTTT---CCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14396 || || ||| ||| | ||| | | | ||| | || || |||||||||| || Sbjct 871303 TTATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTT 871244 Query 14397 GCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAAT 14456 || | || ||||||||||| ||| || || ||||| || || || | |||||| Sbjct 871243 GCCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAAT 871184 Query 14457 CT 14458 || Sbjct 871183 CT 871182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727850085000