Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5 114 1e-20 >seq5 Length=4166812 Score = 114 bits (126), Expect = 1e-20 Identities = 210/303 (69%), Gaps = 11/303 (4%) Strand=Plus/Minus Query 13951 CTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCT 14010 ||||| ||||||| || || ||||| || || || ||||||||||| |||||||| ||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 14011 TCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAA-GTTTTCATTAACAATACCATC 14069 || | ||| || || || | | ||| || ||| |||||| || ||||||||||| Sbjct 871420 TCAGGTATTTGAACTTCAGA-CATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 14070 ACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---TTGAG 14126 | || || ||||| ||||||| || || |||||| || ||||||| || | Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAG---TGACGTTCATTGTCATTCAA 871305 Query 14127 TTTTTT---CCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACT 14183 ||| || ||| ||| | ||| | | | ||| | || || |||||||||| || Sbjct 871304 TTTATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCT 871245 Query 14184 AGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || | || ||||||||||| ||| || || ||||| || || || | ||||| Sbjct 871244 TGCCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAA 871185 Query 14244 TCT 14246 ||| Sbjct 871184 TCT 871182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 201/298 (67%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||| || ||||| || || || || | ||| || | ||||| ||||| || | Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||| | || || || || | |||||| || | | ||| || || || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAA 871737 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 || || ||||| || ||||| |||| | ||||| ||||||| || ||| | Sbjct 871736 GATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGAC---TTGGAGTTGGT 871680 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 |||||| | |||||| |||| |||||| || | | | || ||||| |||||||| Sbjct 871679 AATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATT 871620 Query 13899 GAATAAATGTTCCTTCTCTTTA---GTACTTGAAATGTATGTATCAATAAGTAAGCTA 13953 ||||| | |||| | || | | | || ||| ||||||||||| | ||| ||| Sbjct 871619 AAATAA---TACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588650441000