Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 seq3 114 2e-20 >seq5 Length=4166812 Score = 165 bits (182), Expect = 1e-35 Identities = 221/303 (73%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 ||||| |||| |||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 42413 TCGGTAACCTGTACTTCTGTACA--AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGT 42470 || | | || ||||| | ||| || | | | || | |||||||| || || || | Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTG-GCAAGGTTTTCGTTGACAATACCAT 871363 Query 42471 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT 42530 || ||| || ||||| |||||||||| || ||||| | ||| | | |||| Sbjct 871362 CAGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATT 871303 Query 42531 TATTC---CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATG 42587 ||||| || || |||| ||| | | | ||| | ||||| | |||||||| || Sbjct 871302 TATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTG 871243 Query 42588 CTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATC 42647 | ||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||| Sbjct 871242 CCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATC 871183 Query 42648 TAT 42650 ||| Sbjct 871182 TAT 871180 Score = 122 bits (134), Expect = 1e-22 Identities = 209/296 (71%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| || || ||||| || ||||| || || | ||| || || ||||||||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGCAAATGATCCAGAAAAGA 42182 || ||||| || |||||||| || |||||||| || | || ||| | ||| || | Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTA-CCACTGAAAA 871738 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--ACCGGCACTGTCATG 42240 |||| ||||| || || ||||| || | | | || || | || | | || Sbjct 871737 AGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGA--GTTGGT 871680 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| | |||||| || || || || |||||||| || || ||||| || ||||| Sbjct 871679 AATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATT 871620 Query 42301 AAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 ||| | ||| |||||||||| || ||||| ||||||||| || || | |||| Sbjct 871619 AAATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 114 bits (126), Expect = 2e-20 Identities = 427/664 (64%), Gaps = 4/664 (1%) Strand=Plus/Plus Query 71971 AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTC 72030 ||||||||| ||| || ||||| | ||| |||||||| ||| | | || |||| | Sbjct 2513275 AATCCAGGAGCTTCGTTTGGACAAAACAACGACCACTCGGCATTCTGTTCGACACGTTCC 2513334 Query 72031 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTT 72090 ||||||||||| | | ||| || || ||| || || | || | ||| || || Sbjct 2513335 ATAAAGAGATCGGATACCCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTA 2513394 Query 72091 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 72150 || ||||||||||| ||||| ||| | | ||| || || ||||| ||||| | ||| Sbjct 2513395 CCGTGGTTCTTTTTAAGGTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAG 2513454 Query 72151 ATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 72210 | || | | ||| | ||| ||| || || || | || | || || | ||| Sbjct 2513455 ACAGCAAACGCACCCTTTCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTA 2513514 Query 72211 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 72270 | || | | |||||| | | ||| ||| | ||| ||||| || ||||||| | Sbjct 2513515 AACACACGTAGCATTGGCACCAAACCGTTGCTAGTACCGTTGGTTCCACGGATATAGGAT 2513574 Query 72271 CCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 72330 | |||||| || ||| | | | ||| || || || || | || || || | Sbjct 2513575 CGTGCGGCACGGATCTTGTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGG 2513634 Query 72331 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 72390 || ||| | || | ||| ||||| || || || || || ||| |||| | | || Sbjct 2513635 GCACATTGCTTGAGCGTGTCATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGG 2513694 Query 72391 AAACAGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 72449 ||||| || ||||||| | | ||| | || || || ||||| | ||| || | || || Sbjct 2513695 AAACAACTCGACATTT-GAGGCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCATG 2513753 Query 72450 CGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 72508 |||||| | | |||| | | | |||||| ||||| || | || || || || Sbjct 2513754 CGTAAAGTAACGGTTTGACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACC 2513813 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | || || || | | ||||||||| |||| || || || | ||| | |||| | | || Sbjct 2513814 G-TGGATACCAAGTGAGACACGCATCAACAAGTGTTGGGGACGTTCGATGATCATATCAT 2513872 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | | ||| ||||| ||| | || || ||||| ||| ||| || ||||| Sbjct 2513873 TGACACGGTGCAAATAGGAACGTTCGAGTGTCTTGAAACCGAAAAAGTCATACTCAAAGT 2513932 Query 72629 CTCG 72632 | || Sbjct 2513933 CACG 2513936 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 ||||| || |||||||| || || || ||||| |||| |||| ||||||||| Sbjct 2512111 GTACGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAG 2512170 Query 70891 GTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATG 70950 || ||||||| | || | || ||||| || | || | |||||||||||| ||||| Sbjct 2512171 GTGAGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATA 2512230 Query 70951 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAA 71004 ||||| || ||||| |||||||| | |||| || ||| |||| |||||| Sbjct 2512231 AAGGCACCTCTGTCGGCAGCCATATCAATGAGTGTACGTTGACGAATCTCCCAA 2512284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138990269000