Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq24 114 1e-20 seq21 109 6e-19 seq2 100 3e-16 seq3 95.1 1e-14 >seq24 Length=3408800 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| ||||| |||||||||||| | || | |||||| | ||||||||| Sbjct 192441 GTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCTAATTGTTTACCG 192500 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| |||||||| ||||| || || || ||||| ||||| ||| || || Sbjct 192501 GCAAAGATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTGGTCTTG 192560 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | ||| ||||| | || | ||||||||||||||||| Sbjct 192561 ACATTTTCGATAGTGTCAGAACCTTCGACTTCCAAGGTGATGGTCTTGCCGGTCAATGTC 192620 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 192621 TTGACAAAGATTTGCATA 192638 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||||||||| | || || || || | ||||||||| Sbjct 191984 GTGGATTCCTTTTGAATGTTGTAATCCGAGAGGGTTCTGCCATCCTCTAATTGTTTACCG 192043 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| |||||||| ||||| || || || ||||| ||||| | | | || || || Sbjct 192044 GCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTC-TTGAATCTTGGTCTT 192102 Query 143108 AGC-TGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | | ||| | ||||| | ||| ||||||| ||| | ||||| || |||||||| Sbjct 192103 AACGTTTTCAATGGTGTCGGATCCTTCGACTTCAAGAGTGATGGTCTTACCAGTCAATGT 192162 Query 143167 TTTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 192163 CTTGACAAAGATCTGCATA 192181 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||||||||| | || || || || | ||||||||| Sbjct 192897 GTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCTACCATCCTCTAATTGTTTACCG 192956 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | || |||||||| ||||| || || || ||||| ||||| ||| || || Sbjct 192957 GCGAAAATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTGGTCTTG 193016 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | | ||||||||| | || | || || || || |||||| Sbjct 193017 ACATTTTCGATAGTGTCAGAGCCTTCTACTTCCAAGGTAATGGTTTTACCTGTTAATGTT 193076 Query 143168 TTTACGAATATTTGCAT 143184 || || || |||||||| Sbjct 193077 TTAACAAAGATTTGCAT 193093 >seq21 Length=1919465 Score = 109 bits (120), Expect = 6e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||||||||| || || || ||||||||| || || ||| Sbjct 1444629 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCGAGCTGCTTGCCA 1444570 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| |||||||| ||||| || || || ||||| ||||| || || || Sbjct 1444569 GCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTG 1444510 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||||||| ||| | ||||||||||||||||| Sbjct 1444509 ACATTCTCGATAGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTGCCGGTCAATGTC 1444450 Query 143168 TTTACGAATATTTGCATA 143185 || || || ||||||||| Sbjct 1444449 TTGACAAAGATTTGCATA 1444432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||||||||| || || || |||||| | ||||||||| Sbjct 1445085 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTGTTTACCG 1445026 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || |||||||| ||||| || || || ||||| ||||| ||| || || Sbjct 1445025 GCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTGGTCTTG 1444966 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||||||| ||| | ||||| || || | || Sbjct 1444965 ACATTCTCAATGGTGTCAGATCCCTCAACTTCAAGAGTGATGGTCTTACCAGTGAGGGTC 1444906 Query 143168 TTTACGAATATTTGCATA 143185 ||||| || ||||||||| Sbjct 1444905 TTTACAAAGATTTGCATA 1444888 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| ||||||||||| || || || |||||| | ||||||||| Sbjct 1444401 GTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTGTTTACCG 1444342 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || |||||||| ||||| || || || ||||| ||||| || || || Sbjct 1444341 GCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTCTTG 1444282 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| | ||| || || | || | ||||| || || || ||| Sbjct 1444281 ACATTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTACCAGTTAAAGTT 1444222 Query 143168 TTTACGAATATTTGCAT 143184 ||||| || |||||||| Sbjct 1444221 TTTACAAAAATTTGCAT 1444205 >seq2 Length=1770755 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | |||||||| ||||| ||||||||||| | || | |||||| Sbjct 948840 AACGAGATGGAGGGTAGATTCCTTTTGGATGTTGTAATCCGAGAGGGTACGACCGTCTTC 948899 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||| ||||| ||| |||| |||||||| |||||||| || || ||||| ||||| Sbjct 948900 GAGTTGCTTACCGGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCTTCCTTGTCTTG 948959 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || || || | | ||| | || || | ||| ||||||| ||| | ||||| Sbjct 948960 GATCTTAGCCTTGACGTTTTCGATGGTATCTGAACCTTCAACTTCAAGAGTGATGGTCTT 949019 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || || || || ||||| || ||||| Sbjct 949020 TCCTGTTAAAGTCTTAACGAAGATCTGCAT 949049 >seq3 Length=2750715 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 156142 GACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTT 156201 |||||| ||||| | | ||| || | | | || || | |||||||| || || || Sbjct 2512077 GACGGTGAATTGGATGGCGTCGGCAGCGGCACGAGTACGGAGGTAGTACATACCAGTCTT 2512136 Query 156202 GAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTTGC 156261 ||| || |||||| |||| | |||| || | | ||| |||||||| |||| | Sbjct 2512137 GAGACCCTTCTTCCAGGCGTAGAAATGCATAGAGGTGAGTTT-GGCAAAGTTTGGTTCGG 2512195 Query 156262 CA-TGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTT 156320 || | ||||||||||||| |||||||| |||||||| || || ||||| || ||||| | Sbjct 2512196 CAATAAACACGTTGAACGACTGACTTTGGTCGATAAAGGCACCTCTGTCGGCAGCCATAT 2512255 Query 156321 CAAT 156324 |||| Sbjct 2512256 CAAT 2512259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014241558000