Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 109 8e-19 seq5 91.5 2e-13 >seq3 Length=2750715 Score = 109 bits (120), Expect = 8e-19 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAG-ACGCTGATCGATATGGCTGCCGACAGAGG 98098 |||||| | | |||||||||| | | | | || || || |||||||||||||||||||| Sbjct 2512295 TACAAGTCGGCTTGGGAGATTC-GTCAACGTACACTCATTGATATGGCTGCCGACAGAGG 2512237 Query 98099 TGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCG 98158 || || || ||||| ||||| |||||||| ||| ||||||| || | || | | Sbjct 2512236 TGCCTTTATCGACCAAAGTCAGTCGTTCAACGTGTTTATTGCCGAACCAAACT-TTGCCA 2512178 Query 98159 TA-TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 | | || || || || || ||||| ||||| ||||| |||||||| || |||||||| | Sbjct 2512177 AACTCACCTCTATGCATTTCTACGCCTGGAAGAAGGGTCTCAAGACTGGTATGTACTACC 2512118 Query 98218 T 98218 | Sbjct 2512117 T 2512117 >seq5 Length=4166812 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 |||| ||||| | |||| || || |||||||| || || ||||| || |||||| Sbjct 871692 TCGTTTGCCGAACGTTTGGTAGCTTTTGCCGCCGTTGAAGGTATCTTTTTCAGTGGTAGT 871751 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || | |||||||||||||||||||| || |||||||| || || || ||| Sbjct 871752 TTCTGTTCGATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGTCTCACCTTTTCCAAC 871811 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACT 125581 ||||| || ||| ||||| || || || || ||||||||| ||| || Sbjct 871812 GAGTTGATCAGTCGTGACGAAGGTCTCCATTGCGACTTTGCCTGTCTTCT 871861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058968419000