Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq13 120 4e-22 >seq13 Length=1327167 Score = 120 bits (132), Expect = 4e-22 Identities = 415/642 (65%), Gaps = 23/642 (4%) Strand=Plus/Plus Query 164367 CAATCAAATACCAAATGTTCAATTAA-ATTGGAATTTTGAAGAAATGGGAGTAGGTGGAC 164425 ||||| ||| ||||| ||||| || ||||| | |||||| | ||||| | ||||| Sbjct 255204 CAATCCAAT--CAAATATTCAAACAAGATTGGGACTTTGAAAATATGGGTATCGGTGGTT 255261 Query 164426 TAGATCGAGAATTTTCTCTTATTTTCAGACGAGCATTTGCTTCTAG-ATCAGTTCCTATC 164484 |||| ||||| | ||||||| | || |||||||| || | ||| |||| Sbjct 255262 TAGACAATGAATTCCGTGATATTTTCCGTCGTGCATTTGCATCACGTATCT-TTCCACCT 255320 Query 164485 GAAATAATaaaaaaaTTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCT 164544 | || | ||| | || | ||||| | ||||| || |||||||||| || || Sbjct 255321 GCCATCGTTGCCAAACTTGGTGTTCAACATGTTAAAGGTATCCTATTACATGGCCCACCA 255380 Query 164545 GGTTGCGGTAAAACATTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCC 164601 ||| || || ||||| || ||||| |||| ||| | | ||| || || || Sbjct 255381 GGTACTGGAAAGACATTGATTGCTCGTCAAATTGGA-AAGATGCTCAATGGTCGTGAACC 255439 Query 164602 GTTAAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAAT 164661 || ||||| |||||| ||| ||||| | |||||| ||||| |||||| ||| Sbjct 255440 A--AAGATTGTATCTGGTCCAGAAGTATTGGGTAGATATGTTGGTGAACCAGAAGAGAAT 255497 Query 164662 GTTAGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGCAGGTTTAGCTAGTAAA 164721 || | || || || | || |||||| ||| | ||| |||| | | | | Sbjct 255498 ATTCGTAAATTATTCAAAGATGCTGAAATTGAATACAAGTCTAGAGGTGATGATTCTGCA 255557 Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTGATAATATT 164781 | ||| || || |||| ||||| || ||| | |||| |||| |||||| || | | Sbjct 255558 CTTCATATTGTTATTTTCGATGAAATCGATTCAATTTGTAAAACTCGTGGTACAAAGACT 255617 Query 164782 ATTCATGATG------------CAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | ||| || || | || ||||| || ||| | || || || ||||| Sbjct 255618 GGTGATGCTGGTGTCAACGATTCAATTGTCAATCAATTACTTGCCAAGATTGAAGGTGTT 255677 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 ||||| | ||||||||| | ||| | ||||||||||| || ||| | |||||||| Sbjct 255678 GAATCTCTCAATAATATTCTTATTATTGGTATGACCAATAGAAAGGATATGATTGATGAA 255737 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 ||| | | || || ||||| | ||| | | | |||||| | || || || | Sbjct 255738 GCTCTTCTTCGTCCAGGTCGTCTTGAAGTACACGTTGAAATATCTCTCCCAGATGAACAT 255797 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAA 164991 ||||| | ||||| || || | ||| |||||||| || Sbjct 255798 GGACGTCAACAAATCTTCAAGATCCATACATCTAAAATGCAA 255839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871813790000