Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1 188 1e-42 seq21 136 6e-27 >seq1 Length=2485436 Score = 188 bits (208), Expect = 1e-42 Identities = 381/551 (69%), Gaps = 16/551 (3%) Strand=Plus/Minus Query 193647 GAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC-CAGAGTA 193705 ||| | ||||||||||| || || |||||||| || || || ||||| ||| ||||||| Sbjct 1668057 GAGGTATATAATCTTGGAGCACAGAGTCATGTAAAGGTATCGTTTGA-ATGTGCAGAGTA 1667999 Query 193706 TACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTGGG 193765 ||||||| |||| |||||| |||| ||| | | || || || |||| || || Sbjct 1667998 TACTTCTGATGTGGATGCTCTAGGGTGTCTACGTCTGCTAGATGCCATTCG-ATCGTGTA 1667940 Query 193766 A-ATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGTTC 193824 | |||||||| | || | |||||||| ||||| || ||||||||||| | | Sbjct 1667939 ATTTGGAGAAACAAGTCAAGTTTTATCAGGCCTCTACGAGTGAACTGTATGGCAAGG--C 1667882 Query 193825 TAGG--CACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGC 193882 ||| | |||| ||||| || || ||||| |||| || || || || | || || Sbjct 1667881 AAGGGAGATACCACAGTCAGAGACGACGCCATTCTATCCTCGGTCACCATACGCAGTGGC 1667822 Query 193883 AAAGTTGTATGGTTATTGGATCAT-CAAGAATTATCGTGAGTCATATGGATTCCACGCTA 193941 || | || || |||| ||| || ||||||||| |||| || || || Sbjct 1667821 CAAACAATTTGCATACTGGA-CATGTGTAAACTATCGTGAGGCATACGGTATCTTTGCGT 1667763 Query 193942 GTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTA 194001 | |||||||| ||||| ||||| ||||| | |||||| ||||||||| ||||| | Sbjct 1667762 GCAACGGTATTCTGTTCAACCACGAGTCTCCTCGTAGAGGTATGACATTTGTCACTCGAA 1667703 Query 194002 AGATTACACAAGGTTTAT--CTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGG 194059 ||||||||| ||||| | | || | || | | | | | |||||||| Sbjct 1667702 AGATTACAC--GGTTTGTGGCACGTATAAAGGCCGGTCAAAACGACACCTTGTATCTTGG 1667645 Query 194060 TAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTT 194119 ||| | ||||| ||||| |||||||| || |||| || ||||| || || |||||||| Sbjct 1667644 CAATTTGAATGCAAAGAGAGATTGGGGTCATGCAAGAGACTATGTAGAGGCAATGTGGTT 1667585 Query 194120 AATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGA-ACAGTATTCTG 194178 ||||||||||| || || | | |||| || ||||| || ||||| ||| | || | Sbjct 1667584 GATGTTGCAACAAGACCAAGCACAAGATTTCGTTATTGCCACTGGTGAGACA-CACTCGG 1667526 Query 194179 TTAGAGACTTT 194189 | ||||| ||| Sbjct 1667525 TCAGAGAGTTT 1667515 >seq21 Length=1919465 Score = 136 bits (150), Expect = 6e-27 Identities = 113/138 (82%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 194052 TATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCG 194111 |||||||||||| |||||||||| | ||||||||||| || |||||||||||||| Sbjct 194270 TATCTTGGTAATATTAATGCTAAACGTGATTGGGGACATGCTCGTGATTATGTTGAAGCA 194211 Query 194112 ATGTGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGTGAACAG 194171 |||||||||||||| ||||| | | |||||| |||| ||| ||||| || |||||| | Sbjct 194210 ATGTGGTTAATGTTACAACAAAAAGTACCCGAGGATTTTGTCATTGCCACTGGTGAAACG 194151 Query 194172 TATTCTGTTAGAGACTTT 194189 ||||| ||| | |||||| Sbjct 194150 TATTCAGTTCGTGACTTT 194133 Score = 122 bits (134), Expect = 1e-22 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 193645 CTGAGATCTATAATCTTGGTGCTCAAAGTCATGTTAAAGTTTCCTTTGAGATGC-CAGAG 193703 |||| |||||||||||||||||||||||||| || || || || ||||| |||| | || Sbjct 194825 CTGAAATCTATAATCTTGGTGCTCAAAGTCACGTAAAGGTATCTTTTGA-ATGCTCTGAA 194767 Query 193704 TATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTG 193763 ||||| | ||||||||| | ||| ||| | || || || || |||||| |||| Sbjct 194766 TATACAGCCGATGTTGATGGAGTTGGATGTCTACGTATCCTAGATGCCATTCGTA-GTTG 194708 Query 193764 -GGAATGGAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGT 193822 ||| |||||||| ||| ||||||| || || || ||||| |||||| || Sbjct 194707 TGGATTGGAGAAAAGAGTTAAATTCTATCAAGCTTCAACTTCTGAACTCTATGGTAAAGT 194648 Query 193823 TCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGT 193877 || || ||| | ||| |||| || ||||| ||||| | |||||||||||| Sbjct 194647 TCAAGAGGTTCCTCAATCTGAAAAAACTCCATTCTATCCAAGATCTCCTTATGGT 194593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807554947639000