Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq5 172 6e-38 >seq5 Length=4166812 Score = 172 bits (190), Expect = 6e-38 Identities = 220/300 (73%), Gaps = 5/300 (2%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||| |||||||||| |||||||| || || || ||||| || || ||||||||||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 21827 TCTGAACATTGAACCTCGGA-ATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | |||||| || || || || | | || || | |||||| || || || ||||| Sbjct 871420 TCAGGTATTTGAACTTCAGACATGAACTTGGTG-GCAAGGTTTTCGTTGACAATACCATC 871362 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 | ||| || ||||| ||||||| ||| || ||||| | ||||| || || | ||||| Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTT 871302 Query 21946 TTTC---CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGC 22002 ||| || || | ||| ||| ||||| | ||||| | |||||||||||| || Sbjct 871301 ATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGC 871242 Query 22003 AATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCT 22062 ||||||||||||||| |||| ||||| ||||| | ||||| |||| ||||| || Sbjct 871241 CTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCT 871182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900633781000