Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 161 1e-34 seq3 132 6e-26 >seq5 Length=4166812 Score = 161 bits (178), Expect = 1e-34 Identities = 221/303 (73%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 ||||| |||| |||||||| ||||||||||| || ||||| || ||||||||||| || Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAA-TTTTCATTCACTATTCCGTC 33710 || | || || ||||| | ||| | | | | ||| ||||| || || || || || Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 33769 | ||| || ||||| |||||||||| || ||||| | ||| | || || | || Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCAT-TGTCATTCAATT 871303 Query 33770 TATTC---CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826 ||||| || || |||| ||| | | | ||| | ||||| |||||||||| || Sbjct 871302 TATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTG 871243 Query 33827 CCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 ||||||||||||||||||| ||||| || || ||||| |||||||| | |||||||| Sbjct 871242 CCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATC 871183 Query 33887 TAT 33889 ||| Sbjct 871182 TAT 871180 Score = 127 bits (140), Expect = 3e-24 Identities = 209/296 (71%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 33303 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 33362 ||| || || ||||| || ||||| ||||| | ||| || | ||||||||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 33363 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAA 33422 || ||||| || |||||||| || |||||||| || ||| ||| ||| || || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAA 871737 Query 33423 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCATG 33479 ||| ||||| || || ||||| || | | | || || | || || | || | Sbjct 871736 GATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGTA-- 871679 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| | |||||| || || || || |||||||| || || ||||| || ||||| Sbjct 871678 -ATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATT 871620 Query 33540 AAAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 ||| | ||| |||||||||| || ||||| ||| ||||| || || | |||| Sbjct 871619 AAATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 132 bits (146), Expect = 6e-26 Identities = 567/878 (65%), Gaps = 25/878 (3%) Strand=Plus/Plus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| ||||| || || ||||||||||| || | || | || || || ||||| Sbjct 2512999 GCAATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGAAGTGTACTGGATAATCTCG 2513058 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 || || ||||| || | ||||| || | || | ||| || ||||| || || Sbjct 2513059 GTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAA 2513118 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 || ||||| || || ||| |||| |||||||| || || || || || || || || | Sbjct 2513119 GCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAAC 2513178 Query 63072 CAGACGACTCGAGCCTTTA-----TTATAGATTTGTATCTCCTTTCTCTT-TCGTAT--A 63123 |||| | || | ||||| | ||| | | ||| | ||| ||||| | Sbjct 2513179 CAGAGGTCTTGTGCCTTGACCACCTTACGGGCTA--ATC-CAGGAGTCTGCTCGTAGGAA 2513235 Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 ||| | | ||| ||||| ||| || | || | ||||||||||| ||| | | Sbjct 2513236 AGGTAGAGA-TCGCG-GAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTG 2513293 Query 63184 GACACATCAACGACCACTCTCCGTCATCC--TTC-ACTCGTTTCATAAAGAGATCAGGAA 63240 |||| | ||||||||||| || ||| | ||| || |||| |||||||||||| | | Sbjct 2513294 GACAAAACAACGACCACT---CGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATA 2513350 Query 63241 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63300 ||| || || ||| || || | || | || || || || |||||||||| Sbjct 2513351 CCCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAA 2513410 Query 63301 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63360 | ||||| ||| | | ||| || || ||||| ||||| | ||| | || | | || Sbjct 2513411 GGTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCT 2513470 Query 63361 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63420 | ||| ||| || || || | || | || || | ||| | || | | ||||| Sbjct 2513471 TTCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTG 2513530 Query 63421 GAATAATACCGTTTGATA-TACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA 63479 | | | |||| ||| || |||| ||||| || ||||||| || |||||| || Sbjct 2513531 GCACCAAACCG-TTGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATC 2513589 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 || | | | ||| || || || || | || || || | || ||| | || | | Sbjct 2513590 TTGTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGC 2513649 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 |||||||| ||||| || || || || |||| | | || ||||| || |||||| Sbjct 2513650 GTGTCATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATT 2513709 Query 63600 TGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 | | | ||| | || || || ||||| | ||| || | || |||||||| | | Sbjct 2513710 T-GAGGCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTT 2513768 Query 63659 AGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTG 63717 || | | | | |||||| ||||| || | ||| || || || | || || || | || Sbjct 2513769 TGACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCG-TGGATACCAAGTG 2513827 Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63755 ||||||||| |||| ||| || || | ||| | |||| Sbjct 2513828 AGACACGCATCAACAAGTGTTGGGGACGTTCGATGATC 2513865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947005329000