Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 394 2e-104 seq8 109 1e-18 seq5 102 2e-16 seq13 84.2 6e-11 >seq3 Length=2750715 Score = 394 bits (436), Expect = 2e-104 Identities = 1195/1824 (66%), Gaps = 69/1824 (4%) Strand=Plus/Minus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 |||||||| ||||||| | ||||| | || ||||| | ||| |||||| | Sbjct 2513927 GAGTATGACTTTTTCGGTTTCAAGACACTCGAACGTTCCTATTTGCACCGTGTCAATGAT 2513868 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 || | ||||| || || || |||| |||||||| | |||||||||| | Sbjct 2513867 ATGATCATCGAACGTCCCCAACACTTGTTGATGCGTGTCTCACTTGGTATCCACGGTGAC 2513808 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGC--TTCTAAGTGCTCGTGTATTCACGCACG 363556 || |||| || || ||||| || || | | || | | | || || ||||| | Sbjct 2513807 GACATTGACGCTGCCATTGACACGTACGACCAATTGTCAAACC--GTTACTTTACGCATG 2513750 Query 363557 CCACGCCAACAATGTACAATGCTGG----AACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 |||| ||||| | | || ||||| |||||| || || ||||| ||| || Sbjct 2513749 CCACCCCAACCCTCTTTAACGCTGGCACCAACTCG----CCTCAAATGTCGAGTTGTTTC 2513694 Query 363613 CTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCT 363672 || | | ||||||||||| || ||||| ||||| | |||||| || ||| | ||||| Sbjct 2513693 CTCGTGCAGATGAAGGACGACTCGATCGAAGGTATTTATGACACGCTCAAGCAATGTGCC 2513634 Query 363673 CTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACA-GA 363730 || |||||||||| ||| || || |||||| | | | ||||| | |||| | || || Sbjct 2513633 CTCATTTCCAAGAGTGCCGGTGGTATTGGTATCGCCGTGCACAAGATCCGTGCCGCACGA 2513574 Query 363731 ACAGTTACATTCGCGGCACAGGGGGATACTCG-AATGGGCTGGTTCCCATGCTTCGTGTG 363789 | || || || || || || |||| | || || |||| || ||||| |||||| Sbjct 2513573 TC--CTATATCCGTGGAACCAACGG-TACTAGCAACGGTTTGGTGCCAATGCTACGTGTG 2513517 Query 363790 TTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCT 363849 ||| || ||||||| | || |||||||| |||||||| ||| | || || ||||||||| Sbjct 2513516 TTTAACGATACTGCCCGTTATGTCGACCAAGGTGGAGGCAAGAGAAAGGGTGCGTTTGCT 2513457 Query 363850 ATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACG 363909 | || ||||| || || | || ||||| |||||||| || || || ||| Sbjct 2513456 GTCTACCTCGAACCATGGCACTCGGACATTTTCGAGTTTCTCGACCTTAAAAAGAACCAC 2513397 Query 363910 GGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTT 363969 || ||||| || ||||||| ||||| || || || ||||| ||||| || || | ||| Sbjct 2513396 GGTAAAGAAGAGATGCGTGCCCGTGACCTCTTTTACGCACTCTGGGTATCCGATCTCTTT 2513337 Query 363970 ATGAAGCGCGTGGAGGCAG-GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGG 364028 ||| | || || || ||| | | ||||| | ||||| ||| ||||| ||| || Sbjct 2513336 ATGGAACGTGTCGA-ACAGAATGCCGAGTGGTCGTTGTTTTGTCCAAACGAAGCTCCTGG 2513278 Query 364029 TCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA--- 364085 | ||||| | || ||| | | | ||| ||| || | | | || Sbjct 2513277 ATTGGCCGATTGCTACGGCGACAAGTTCCGCGATCTCTACCTTTCCTACG-AGCAGACTC 2513219 Query 364086 -GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGC 364144 ||| || |||||| | ||||| | || |||||||||||||| || |||| Sbjct 2513218 CTGGATTAGCCCGTAAGGTGGTCAAGGCACAAGACCTCTGGTTTGCCATCATCGACTCGC 2513159 Query 364145 AGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACC 364204 | || ||||| || || || || || | ||||| || | ||||| |||||||||| Sbjct 2513158 AAATCGAGACTGGTACCCCATACATCCTCTACAAGGACGCTTGCAATGAAAAGTCCAACC 2513099 Query 364205 AGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCG 364264 | || ||||||| || ||||| ||| || |||||||||||||| | ||||| Sbjct 2513098 AAAAGAACCTTGGCACTATTCAATGCTCCAATCTCTGTACCGAGATTATCCAGTACACTT 2513039 Query 364265 CTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-- 364322 | ||||||| ||||| || |||||||| ||||| || || || |||||| || Sbjct 2513038 CAGCCGACGAAGTAGCCGTTTGCAACCTTGCATCGATTGCTCTACCAAAGTTTGTCAAGC 2512979 Query 364323 --AGAT--------------GGTACTTTTGACCACCAGCATCTTTATGACGTAACC--TA 364364 || | | | | |||||||| | ||||| || | ||| || Sbjct 2512978 GTAGTTCGCCATCGGCCGTCGCTTCATTTGACCATAACCATCTCGCCGAAATCACCCGTA 2512919 Query 364365 TCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGC 364424 |||| ||| | || ||| ||||| | || ||| |||| || ||| | ||||| Sbjct 2512918 TCAT--TACACGTAACCTCAACAAGATCATTGACCGTAATTTCTACCCAGTCGAAGAAGC 2512861 Query 364425 CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGT 364484 ||||| || ||||||||||| || | || |||| | || || | || ||||| Sbjct 2512860 TCGTCGTTCCAACATGCGTCATCGTCCAACCGGCATTGGAATTCAAGGTTTGGCCGACGT 2512801 Query 364485 TTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGAT 364544 ||||| ||| ||| ||||||| || || | || || || || |||||||| Sbjct 2512800 CTTTATCGCTCTCCGTATGCCATTTGACTCACCAGCTGCCGCCGTCCTCAACAAGGAGAT 2512741 Query 364545 CTTTGAAACAATGTATTTTGC-CGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGG 364603 ||||| || || | ||| | |||| || |||||| | ||||| | | | | Sbjct 2512740 TGCCGAAACCATCTACTATGCTTCCCTTGAC-GCATCGTGTCAATTGGCCGAGCGCGACG 2512682 Query 364604 GAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTAT 364663 | ||| || | || || || || ||| || || | | || ||||| | | Sbjct 2512681 GTCCATACGAGACCTTTGCAGGTTCGCCCGCTTCCCAAGGTATCCTACAATTTGACATGT 2512622 Query 364664 GGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAG--AA 364721 || ||||| ||||||| ||| ||| |||||| |||| |||||| | || Sbjct 2512621 GGGATGTCCAACCATCTGCCCGTTGGGACTGGG--CCGCTCTCAAACAACGTATCGTCAA 2512564 Query 364722 GCATGGTACTCGCAACTC---CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACA 364778 || ||| || ||||| ||||| || |||||||| || || || || |||| Sbjct 2512563 ACACGGTCTACGTAACTCGTTGCTCGT---CGCACCCATGCCAACAGCATCCACCTCACA 2512507 Query 364779 GATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGT 364838 ||| ||||| ||||| ||||| || ||||| | || ||||| |||| || ||| ||| Sbjct 2512506 GATTCTCGGCAACAATGAGTGTTTTGAACCATACACTAGCAACATTTACTCGCGCAAGGT 2512447 Query 364839 TCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGG 364898 | |||| || ||| | || || || ||| | | || ||||||| | | || Sbjct 2512446 CTTGGCCGGCGAGTTTACCGTCGTCAACAAGCAATTGCTCCAGGATCTCATGGCACTTGG 2512387 Query 364899 GCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAA---TGGTTCTGTGCAGAA 364955 ||||| | | ||||||||| | ||||| ||||| ||| || || || || Sbjct 2512386 TTTGTGGACTCCCGAAATGAAGAACCAAATCAT---TGCTAACCGTGGGTCGGTACAAAA 2512330 Query 364956 CATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATT--TCC 365013 | | | ||| | || || || || || | ||||| | | ||||| ||| || Sbjct 2512329 CGTCCAAGGTATCCCCGACGACCTCAAAGAGCTGTACAAGTCGGCTTGGGAGATTCGTCA 2512270 Query 365014 ATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCG 365073 | || || |||||||||||||| ||||| | ||||| |||||| || || |||||| Sbjct 2512269 A--CGTACACTCATTGATATGGCTGCCGACAGAGGTGCCTTTATCGACCAAAGTCAGTCG 2512212 Query 365074 TTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133 || ||||| || || | | |||| || ||||| || || || ||||||||||||| Sbjct 2512211 TTCAACGTGTTTATTGCCGAACCAAACTTTGCCAAACTCACCTCTATGCATTTCTACGCC 2512152 Query 365134 TGGAAATCCGGTCTTAAGACAGGT 365157 ||||| ||||| ||||| ||| Sbjct 2512151 TGGAAGAAGGGTCTCAAGACTGGT 2512128 >seq8 Length=1908399 Score = 109 bits (120), Expect = 1e-18 Identities = 311/466 (67%), Gaps = 18/466 (4%) Strand=Plus/Plus Query 145292 ATTTTTATCGGTTCGCACTTTGATAAAACGAGGAAAACGAAGAGCAATACCCTTATTTGG 145351 ||| ||||| | || | || ||||| | || ||||||||||| || ||||| || || Sbjct 1012913 ATTCTTATCTTTACGAATTTGAATAAATCTTGGGAAACGAAGAGCTATGCCCTTGTTGGG 1012972 Query 145352 GTCAACGATTCCATGTCCTGCCATGTGAACCGGAGAAATTGACAAATCTGCCGACAATAC 145411 || | | || | || |||||| ||||| || || | ||| || | |||||| Sbjct 1012973 ATCCAACACACCGACGGCAGCAGTGTGAATGGGAGAGATGGAGAGATCGGCGGCCAATAC 1013032 Query 145412 TTCCCATACTTGAGTTGGACTAAACCAAACATCTGGTTTAAGCGATGGTACATCTGCGAC 145471 |||||| || |||| |||| | ||||||||||||||||| | || || || | ||| Sbjct 1013033 TTCCCAGACCTGAGATGGATTGAACCAAACATCTGGTTTTA--AATTGT-CAGATACGAT 1013089 Query 145472 ATA-GTAATCAGACGGTTTCTGTGGTACAATATGTGGCGTAAGACTGTCGGACAATTGAA 145530 ||| || | || | |||| | ||||| | || | || | |||| Sbjct 1013090 ATAGGTGTTTTTACAACT--ATTGGT--GACTTGTGGTGCGAGGATCTCAGTAAATTCTT 1013145 Query 145531 TTAAATCTTCATCTGAAAATCCAGTTCCGATCTTGCATACACTTTGGAACACTTCTTCGT 145590 | | | |||||| ||| ||||| || |||||||| | | ||||||| |||| | || Sbjct 1013146 TCAGTTGTTCATCACTAAACCCAGTACCAATCTTGCAAAGAGTTTGGAAATCTTCATTGT 1013205 Query 145591 CTGGATCATA-CACCGCAAGAAGGTATGCACCATATACACCAGTACGTTTTCCGCGACCG 145649 | ||||| || ||| || || |||||||| ||||||||||| || || ||| Sbjct 1013206 CATCGTCATAGCATGCCAATAA-ATAGGCACCATAGACACCAGTACGCTTACCCTTTCCG 1013264 Query 145650 GTATACC---CCGCAATTGGTACAAGATCACAACTA-TCACCCATTCCGGCAAGATAATC 145705 |||| | |||| || |||| || | | | || ||| || || | ||||| Sbjct 1013265 ---TACCATGCACCAATGGGAACAACGTC-GACCGAGTCTGTCATGCCTGCCATGTAATC 1013320 Query 145706 CTTTTTAAGTTTTAGCCAATTGAGAGAACGTTTCGATGGTTCATAG 145751 |||||| | || ||||| ||| ||||| || |||||||||||| Sbjct 1013321 CTTTTTGATCTTGAGCCAGTTGTACGAACGCTTGGATGGTTCATAG 1013366 >seq5 Length=4166812 Score = 102 bits (112), Expect = 2e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAA-TGAACGTTCATTCGCGGAACG 22493 ||||| || || || ||||| ||| |||||| | ||| | | || | || || ||||| Sbjct 871647 AAGAAAAAAGCTGACTGGGCTTTGAGATGGATTACCAACTCCAAGT-CGTTTGCCGAACG 871705 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 | | | || ||||| | |||||||| || || || ||| || ||| | ||||| Sbjct 871706 TTTGGTAGCTTTTGCCGCCGTTGAAGGTATCTTTTTCAGTGGTAGTTTCTGTTCGATCTT 871765 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||||| || || |||| | ||||| ||||| || ||||| || ||||| || || || Sbjct 871766 TTGGCTCAAGAAGCGTGGTCTCATGCCAGGTCTCACCTTTTCCAACGAGTTGATCAGTCG 871825 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATAT 22653 || || ||||| ||| ||| ||||| ||| | || ||| Sbjct 871826 TGACGAAGGTCTCCATTGCGACTTTGCCTGTCTTCTCTAT 871865 >seq13 Length=1327167 Score = 84.2 bits (92), Expect = 6e-11 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 371456 ACCAATGGTCATGCGTGATGGGATGGCATGTGGATTGATGATAATATCGGGTGCAACTCC 371515 |||||| ||||| |||||||| || ||||||||||||| |||||||||||| | || || Sbjct 628744 ACCAATAGTCATACGTGATGGAATAGCATGTGGATTGACGATAATATCGGGAACGACACC 628685 Query 371516 GTCGGCTGTGCATGGAAAGTCGGCTGCTGGC-ATA-GTGACGCCACACACACCTTTTTGC 371573 ||| | || ||||||| || || || | ||| | | ||||| ||| ||||| Sbjct 628684 TTCGACGGTCCATGGAAGATCTTCT--TGACGATATGCCATACCACAGGTACCCTTTTGT 628627 Query 371574 CCGTGCCTGGCCGAGAATTTGTCGCCTACCATTGGAATACGAATAGCACGTGTTCGTACC 371633 ||||| | | || || ||||| || | | ||| |||| || | ||| |||||| Sbjct 628626 CCGTGACGCGATGAAAACTTGTCACCAATCTGTGGGGTACGCATGGAACGGACACGTACC 628567 Query 371634 TT 371635 || Sbjct 628566 TT 628565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353182519550