Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq24 104 2e-17 seq21 98.7 8e-16 >seq24 Length=3408800 Score = 104 bits (114), Expect = 2e-17 Identities = 149/207 (72%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAG--TCC 115342 ||||||||||||||||| || ||||| || || ||||| ||| ||||| || || ||| Sbjct 192865 ATGCAAATTTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGATCC 192806 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | || || || ||| || || ||||| |||| |||| Sbjct 192805 ---GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGAT 192749 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||| | ||||| | ||| || |||||||||||||| | || ||| || | || || Sbjct 192748 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTTTGTCGGACTAC 192689 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 ||||| ||||| || || ||| | ||| Sbjct 192688 AACATCCAAAAGGAATCCACTCTCCAT 192662 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 || ||||||||| ||||| ||||| | || || |||||||||||| | ||| || Sbjct 193097 AACAATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAAGG 193038 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | |||||| | | | | || || || ||| || || ||||| |||| ||| Sbjct 193037 CTCTGACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGA 192978 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| ||| | || |||| || || ||||||||||| |||| | |||| | | ||||| Sbjct 192977 TCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTA 192918 Query 115462 TAACATTCAAAAAGAGTCTACTATACAT 115489 ||||| ||||| || || ||| | ||| Sbjct 192917 CAACATCCAAAAGGAATCCACTCTCCAT 192890 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAG--TCC 115342 ||||| || |||||||| || | || || || ||||| || | ||| || || ||| Sbjct 192180 ATGCAGATCTTTGTCAAGACATTGACTGGTAAGACCATCACTCTTGAAGTCGAAGGATCC 192121 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||||| ||| | | || || || ||| || || ||||| |||| |||| Sbjct 192120 ---GACACCATTGAAAACGTTAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGAT 192064 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || ||| | ||||| | ||| || ||||||||||| |||| || |||| | | ||||| Sbjct 192063 CAACAACGTCTTATCTTTGCCGGTAAACAATTAGAGGATGGCAGAACCCTCTCGGATTAC 192004 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || || ||| | ||| Sbjct 192003 AACATTCAAAAGGAATCCACTCTCCAT 191977 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||| |||||||| || | || || || ||||| ||| | ||| || || | Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| | | | | || || || ||| || || ||||| |||| ||||| Sbjct 192577 G--ACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATC 192520 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | || || | ||| || |||||||||||||| | | ||| | ||||||| | Sbjct 192519 AACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTACA 192460 Query 115464 ACATTCAAAAAGAGTCTACTATACAT 115489 |||| ||||| || |||||| | ||| Sbjct 192459 ACATCCAAAAGGAATCTACTCTCCAT 192434 >seq21 Length=1919465 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| || || | ||| ||| | Sbjct 1352380 ATGCAAATTTTCGTCAAGACCCTCACTGGTAAAACTATCACTTTGGAAGTGGAAGGATCC 1352439 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | ||||| || ||| || || ||||| | || |||||| Sbjct 1352440 GATACCATTGAAAACGTAAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 1352499 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| ||| || |||||||||||||| | | ||| || |||| |||||| Sbjct 1352500 CAACGTCTCATTTTTGCCGGTAAACAATTAGAAGACGGAAGAACTTTGTCCGACTATAAC 1352559 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 |||||||| || || ||| | ||| Sbjct 1352560 ATTCAAAAGGAATCAACTCTCCAT 1352583 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAGTCCAG 115344 |||||||| |||||||| || ||||| || || ||||| ||| ||||| || || | Sbjct 1444661 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGTTCG 1444720 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| | | || || || ||| || || ||||| | || |||||| Sbjct 1444721 -GACACCATTGAAAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCA 1444779 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | ||||| | ||| || |||||||||||||| | || ||| | |||| || || Sbjct 1444780 ACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTCTTTCCGACTACAA 1444839 Query 115465 CATTCAAAAAGAGTCTACTATACAT 115489 ||| ||||| ||||| ||| | ||| Sbjct 1444840 CATCCAAAAGGAGTCCACTCTCCAT 1444864 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 |||||||||||||| ||||| | || || || ||||||||| | || || || | Sbjct 1444205 ATGCAAATTTTTGTAAAAACTTTAACTGGTAAGACCATTACCTTGGAGGTTGAAGGTTCT 1444264 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| ||| | | || || || || || || ||||| | || ||||| Sbjct 1444265 G--ACACTATTGAAAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATTCCACCTGATC 1444322 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| | || |||| ||| || |||||||| ||||| | || ||| || | ||||| | Sbjct 1444323 AACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGGATTACA 1444382 Query 115464 ACATTCAAAAAGAGTCTACTATACAT 115489 |||||||||| || || ||| | ||| Sbjct 1444383 ACATTCAAAAGGAATCCACTCTCCAT 1444408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/209 (70%), Gaps = 9/209 (4%) Strand=Plus/Plus Query 115279 ATTAAAA-ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA---- 115333 ||||||| |||||||||||||| ||||| || || || || ||||| ||| | || Sbjct 1351916 ATTAAAACATGCAAATTTTTGTAAAAACTCTTACTGGTAAGACCATCACCTTGGAGGTTG 1351975 Query 115334 ACGGAGTCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTC 115393 | ||| || || || ||| | | ||||| || ||| || || ||||| || Sbjct 1351976 AAGGA-TCT---GATACCATTGAAAATGTAAAGGCTAAGATTCAAGACAAGGAAGGTATC 1352031 Query 115394 CCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATG 115453 || |||||| ||| | ||||| | ||| || || ||||||||||| | || | Sbjct 1352032 CCACCTGATCAACAACGTCTTATCTTTGCTGGAAAGCAATTAGAAGACGGTCGCACTTTA 1352091 Query 115454 GCCGATTATAACATTCAAAAAGAGTCTAC 115482 |||| |||||||||||||| ||||| || Sbjct 1352092 TCCGACTATAACATTCAAAAGGAGTCAAC 1352120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 176/258 (68%), Gaps = 12/258 (5%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA----ACGGAGTC 115341 |||||||| ||||| || || | || || || ||||| || | ||| | ||| || Sbjct 1352608 ATGCAAATCTTTGTAAAGACATTAACCGGTAAGACCATCACTCTTGAAGTTGAAGGA-TC 1352666 Query 115342 CAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGA 115401 | |||||| | | | || || || ||| || || ||||| | || ||| Sbjct 1352667 C---GACACTATCGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGA 1352723 Query 115402 TCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTA 115461 ||| ||| | ||||| | ||| || || ||||||||||| | | ||| || |||| || Sbjct 1352724 TCAACAACGTCTTATCTTTGCTGGAAAGCAATTAGAAGACGGAAGAACTTTGTCCGACTA 1352783 Query 115462 TAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA---AACC 115518 |||||||||||| || || ||| | ||| | || || ||||| || || || | || | Sbjct 1352784 TAACATTCAAAAGGAATCAACTCTCCATCTCGTATTAAGATTACGTGGTGGTAACTAAAC 1352843 Query 115519 ACAATAAAAAATTAATAT 115536 ||| || ||||||| || Sbjct 1352844 TCAA-AATAAATTAAAAT 1352860 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CGGAG--TCC 115342 |||||||| |||||||| || ||||| || || || || ||| ||||| || || ||| Sbjct 1352152 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACAATCACCCTCGAAGTCGAAGGATCC 1352211 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| | | | | || || || || || || ||||| | || |||| Sbjct 1352212 ---GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAT 1352268 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || |||||| | || | ||| || |||||||||||||| | || | |||||||| Sbjct 1352269 CAACAAAGATTAATCTTTGCAGGTAAACAATTAGAAGACGGACGTACTCTTTCCGATTAT 1352328 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 ||||| ||||| || || ||| | ||| Sbjct 1352329 AACATCCAAAAGGAATCAACTCTCCAT 1352355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425343870403000