Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq21 96.9 3e-15 seq24 82.4 7e-11 seq2 82.4 7e-11 >seq5 Length=4166812 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || ||||||||||| |||||||| ||| Sbjct 207610 CCACCACGGAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAG 207551 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || ||||| || || |||| | ||| || ||||| || ||| Sbjct 207550 AGGGTACGACCGTCTTCGAGTTGCTTACCGGCAAAGATAAGACGTTGTTGGTCAGGTGGG 207491 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | ||| |||| ||| | Sbjct 207490 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATAGTGTCGGAACCCTCTACC 207431 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || || ||||| ||||| |||||||| Sbjct 207430 TCTAAGGTAATGGTCTTACCTGTGAGTGTTTTAACGAAGATCTGCAT 207384 >seq21 Length=1919465 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| ||||||||||||||||| || ||| Sbjct 1352150 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGAT 1352091 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| |||| ||||| || || |||| | ||| || || || || ||| Sbjct 1352090 AAAGTGCGACCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 1352031 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||| | | || | ||||| | || | Sbjct 1352030 ATACCTTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAACC 1351971 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| ||||| || ||||||||||| ||||| |||||| Sbjct 1351970 TCCAAGGTGATGGTCTTACCAGTAAGAGTTTTTACAAAAATTTGCATG 1351923 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || |||||||||||||||||||| | Sbjct 1444659 CCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAC 1444600 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || ||||||||||| || |||| | ||| || || || || || Sbjct 1444599 AAAGTTCTGCCGTCTTCGAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCAGGTGGA 1444540 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | ||| | ||| || | ||||| Sbjct 1444539 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATAGTGTCAGATCCCTCGACT 1444480 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | || || || || || ||||| Sbjct 1444479 TCAAGAGTGATGGTCTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 1444433 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || |||||||||||||||||||| | Sbjct 1444431 CCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAC 1444372 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | ||| || | || || || || | || | ||| || || || || || Sbjct 1444371 AAAGTTCTGCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGA 1444312 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | ||| || | || | Sbjct 1444311 ATACCTTCCTTGTCTTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGAACCTTCAACC 1444252 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATT 131242 || | ||||| ||| ||||| |||| ||||||||| ||||| ||||||| || || Sbjct 1444251 TCCAAGGTAATGGTCTTACCAGTTAAAGTTTTTACAAAAATTTGCATGATTTGTT 1444197 >seq24 Length=3408800 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || |||||||| ||||||||||| Sbjct 192867 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGAG 192926 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | ||||||| || || || ||| | || | ||| || || || || ||| Sbjct 192927 AGGGTTCTACCATCCTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGG 192986 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| || || ||||| | || | ||| || | | || | Sbjct 192987 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAGCCTTCTACT 193046 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACTTATTTTATT 131247 || | ||||| ||||||||| |||| ||||| || || || ||||| || |||| || Sbjct 193047 TCCAAGGTAATGGTTTTACCTGTTAATGTTTTAACAAAGATTTGCATTGTTTTTTTTGTT 193106 >seq2 Length=1770755 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | ||| || |||||||| ||||||||||| | ||| || | Sbjct 948835 CGGAGAACGAGATGGAGGGTAGATTCCTTTTGGATGTTGTAATCCGAGAGGGTACGACCG 948894 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || ||||| || || |||| | ||| || || || || ||||| ||||| ||| Sbjct 948895 TCTTCGAGTTGCTTACCGGCAAAGATAAGACGTTGTTGATCGGGTGGGATACCTTCCTTG 948954 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC--TCGATGTCGACGGTAA 131197 || ||| || ||||| | || | ||||| || || || | || | || | Sbjct 948955 TCTTGGATCTTAGCCTTGACGTTTTCGATGGTATC--TGAACCTTCAACTTCAAGAGTGA 949012 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || || |||| ||| || ||||| ||||||||| Sbjct 949013 TGGTCTTTCCTGTTAAAGTCTTAACGAAGATCTGCATG 949050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012652496000