Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq24 98.7 8e-16 seq21 93.3 3e-14 >seq24 Length=3408800 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||| |||||||| ||||||||||| | || ||| || |||| Sbjct 192654 AGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCCGACAAAGTTCTGCCGTCT 192713 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || |||||||| || ||| | ||||| || ||||| || || | || || ||||| Sbjct 192714 TCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCT 192773 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT----TTCCACGGTGA 16898 ||| ||| | ||| || | | | |||||| || ||| | ||| | ||||| Sbjct 192774 TGAATCTTGGT-CTTGACATTTTCGATAGTGTC----GGATCCTTCGACTTCGAGGGTGA 192828 Query 16899 TGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||||||||| ||||| Sbjct 192829 TGGTCTTACCAGTGAGGGTCTTGACAAAAATTTGCAT 192865 >seq21 Length=1919465 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || |||||||||||||| ||||||||||||| | ||| || |||| Sbjct 1444872 AGGACAAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCGTCT 1444813 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || |||||||| || ||| | ||||| || ||||| || || | || || ||||| Sbjct 1444812 TCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCT 1444753 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG-TTTCCACGGTGATGG 16901 ||| ||| | ||| || | | | ||||| | || || ||| | |||||||| Sbjct 1444752 TGAATCTTGGT-CTTGACGTTTTCAATGGTGTC-CGAACCTTCGACTTCGAGGGTGATGG 1444695 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| || ||||| Sbjct 1444694 TCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 1444661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087876574750