Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq21 129 4e-25 seq24 120 2e-22 seq2 118 7e-22 >seq21 Length=1919465 Score = 129 bits (142), Expect = 4e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| ||||||||||| |||||||| | Sbjct 1444433 TACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCG 1444374 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | |||| || |||||||| |||||||| || || ||||||||||| | | Sbjct 1444373 ACAAAGTTCTGCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTG 1444314 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || || ||| ||||| | | ||| || || ||||| Sbjct 1444313 GAATACCTTCCTTGTCTTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGAACCTTCAA 1444254 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 | || || ||||| || ||||| || || ||||| || || || |||||| ||| Sbjct 1444253 CCTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTTACAAAAATTTGCATGATTT 1444200 Score = 127 bits (140), Expect = 1e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| ||||| || |||||||||||| || || || | Sbjct 1352152 TACCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGG 1352093 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| || |||| |||||||| ||||| ||||| || || ||||||||||| | | Sbjct 1352092 ATAAAGTGCGACCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTG 1352033 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| || ||| ||||| | | ||||| | ||||| Sbjct 1352032 GGATACCTTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAA 1351973 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 | || || || || || ||||| || | ||||| || || || ||||||||||| Sbjct 1351972 CCTCCAAGGTGATGGTCTTACCAGTAAGAGTTTTTACAAAAATTTGCATGTTTTA 1351918 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| ||||| ||||||||||| || || || | Sbjct 1352608 TACCACCACGGAGACGAAGGACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGG 1352549 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | | |||| ||||||||||| |||||||| || || ||||||||||| | | Sbjct 1352548 ACAAAGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTG 1352489 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| || ||| || || | | ||||| | ||| | Sbjct 1352488 GAATACCTTCCTTGTCTTGAATCTTGGCCTTTACGTTTTCAATGGTATCGGATCCTTCCA 1352429 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || ||||||||||| || | ||| || ||||| || ||||| Sbjct 1352428 CTTCCAAAGTGATAGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1352380 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| | || | || || | ||| ||||| ||||||||||| || || || Sbjct 1352837 TTACCACCACGTAATCTTAATACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCG 1352778 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||||| | | |||| |||||||| ||||| ||||| || || ||||||||||| | Sbjct 1352777 GACAAAGTTCTTCCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGT 1352718 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| ||||| ||| || ||| ||||||| || ||| || | |||| Sbjct 1352717 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCGATAGTGTCGGATCCTTCA 1352658 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | || || || ||||| || || || || || || || ||||| Sbjct 1352657 ACTTCAAGAGTGATGGTCTTACCGGTTAATGTCTTTACAAAGATTTGCAT 1352608 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| ||||||||||| |||||||| | Sbjct 1445117 TACCACCACGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCG 1445058 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | |||| || |||||||| |||||||| || || ||||||||||| | | Sbjct 1445057 ACAAAGTTCTGCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTG 1444998 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| || ||| ||||||| | || || | |||| Sbjct 1444997 GAATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGATCCCTCAA 1444938 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || ||||| || | ||| || || || || ||||| Sbjct 1444937 CTTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTACAAAGATTTGCAT 1444889 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| ||||||||| || ||||| || | Sbjct 1444889 TACCACCACGGAGACGGAGGACAAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGG 1444830 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | |||| ||||||||||| |||||||| || || ||||||||||| | | Sbjct 1444829 AAAGAGTTCTGCCGTCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTG 1444770 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| ||| || ||| || || | | || || || ||| | Sbjct 1444769 GAATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTTTCAATGGTGTCCGAACCTTCGA 1444710 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || ||||| || | ||| || || || || ||||| Sbjct 1444709 CTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 1444661 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| ||||| |||||||| || || ||||| | Sbjct 1352380 TACCACCACGGAGACGGAGGACGAGATGGAGAGTTGATTCCTTTTGGATGTTATAATCGG 1352321 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | |||| |||| ||||||||||| || ||||| |||| | ||||||||| | | Sbjct 1352320 AAAGAGTACGTCCGTCTTCTAATTGTTTACCTGCAAAGATTAATCTTTGTTGATCAGGTG 1352261 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || || ||| ||||| | || ||| || | ||| | Sbjct 1352260 GAATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGATCCTTCGA 1352201 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || || | ||| || || || || ||||| Sbjct 1352200 CTTCGAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1352152 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| ||||||||||| |||||||| | Sbjct 1444661 TACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCG 1444602 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | |||| || | || || || ||||| || || ||||||||||| | | Sbjct 1444601 ACAAAGTTCTGCCGTCTTCGAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCAGGTG 1444542 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| || || ||| ||||||| || ||| || | || | Sbjct 1444541 GAATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATAGTGTCAGATCCCTCGA 1444482 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || ||||| || || || || || ||||| Sbjct 1444481 CTTCAAGAGTGATGGTCTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 1444433 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 10/95 (11%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| || |||| ||||| || ||| || | Sbjct 1207101 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGTATGGTAGTTAGGGACAGTGGGAATGTCAT 1207160 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||| ||||||||||||| Sbjct 1207161 TTATCCATTCATGCGCG-----AATTAGATGACGA 1207190 >seq24 Length=3408800 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| ||||| |||||||| || |||||||| | Sbjct 192409 TACCACCACGGAGACGAAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTGTAATCGG 192468 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || |||| ||||||||||| |||||||| || || ||||||||||| | | Sbjct 192469 AAAGAGTTCGGCCGTCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGATCAGGTG 192528 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| || ||| ||||| | || ||| || || ||| | Sbjct 192529 GGATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAACCTTCGA 192588 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || || || || || || ||||| || || || || || ||||| Sbjct 192589 CTTCCAAGGTGATGGTCTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 192637 Score = 118 bits (130), Expect = 7e-22 Identities = 168/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| |||||||| || |||||||| | Sbjct 192865 TACCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAATCCG 192924 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | || ||||||||||| ||||| || || || ||||||||||| | | Sbjct 192925 AGAGGGTTCTACCATCCTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTG 192984 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| || ||| ||||| | || ||| || | ||| | Sbjct 192985 GGATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAGCCTTCTA 193044 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCA-TGTTTT 38322 |||| || ||||| |||||||| || || ||||| || || || |||| |||||| Sbjct 193045 CTTCCAAGGTAATGGTTTTACCTGTTAATGTTTTAACAAAGATTTGCATTGTTTT 193099 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | || | ||| |||||| |||||||| || ||||| || | Sbjct 192637 TACCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCCG 192696 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||||| | |||| ||||||||||| |||||||| || || ||||||||||| | | Sbjct 192697 ACAAAGTTCTGCCGTCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTG 192756 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| ||| || ||| ||||| | || ||| || | ||| | Sbjct 192757 GGATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCGGATCCTTCGA 192816 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || ||||| || | ||| || || || || ||||| Sbjct 192817 CTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAAATTTGCAT 192865 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| | | ||| | || | ||| |||||| ||||||||||| |||||||| Sbjct 191951 TTACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCC 192010 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | | | || ||||||||||| |||||||| || || ||||||||||| | Sbjct 192011 GAGAGGGTTCTGCCATCCTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGT 192070 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| ||||| ||| || ||| || || | | || || | ||| Sbjct 192071 GGGATACCTTCCTTGTCTTGAATCTTGGTCTTAACGTTTTCAATGGTGTCGGATCCTTCG 192130 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | || || || ||||| ||||| || || || || |||||||| Sbjct 192131 ACTTCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACAAAGATCTGCAT 192180 >seq2 Length=1770755 Score = 118 bits (130), Expect = 7e-22 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | || | || | ||| || || |||||||| || |||||||| | Sbjct 948821 TACCACCTCTAAGGCGGAGAACGAGATGGAGGGTAGATTCCTTTTGGATGTTGTAATCCG 948880 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || | ||| || |||||||| || || ||||||||||||| | Sbjct 948881 AGAGGGTACGACCGTCTTCGAGTTGCTTACCGGCAAAGATAAGACGTTGTTGATCGGGTG 948940 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| ||||| || || ||| || || | || |||||| || ||||| Sbjct 948941 GGATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTATCTGAACCTTCAA 949000 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| | || || || || || || || || || ||||| |||||||||||| Sbjct 949001 CTTCAAGAGTGATGGTCTTTCCTGTTAAAGTCTTAACGAAGATCTGCATGTTT 949053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947097945775