Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 seq3 116 5e-21 >seq5 Length=4166812 Score = 165 bits (182), Expect = 1e-35 Identities = 222/303 (73%), Gaps = 7/303 (2%) Strand=Plus/Minus Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||||| |||| |||||||| ||||||||||| |||||||| || ||||| ||||| || Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAA-TTTTCATTCACTATTCCGTC 33067 || | || || ||||| | ||| | | | || || ||||| || || || || || Sbjct 871420 TCAGGTATTTGAACTTCAG-ACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 33126 | ||| || ||||| |||||||||| || ||||| | ||| | || || | || Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCAT-TGTCATTCAATT 871303 Query 33127 TATTC---CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 ||||| || || |||| ||| | | | ||| | ||||| |||||||||| || Sbjct 871302 TATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTG 871243 Query 33184 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATC 33243 ||||||||||||||||||||||||| || || ||||| |||||| || | |||||||| Sbjct 871242 CCTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATC 871183 Query 33244 TAT 33246 ||| Sbjct 871182 TAT 871180 Score = 125 bits (138), Expect = 9e-24 Identities = 211/297 (71%), Gaps = 10/297 (3%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || ||||| || ||||| ||||| | ||| || || ||||||||||| ||||| Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT-GGACGCAAATGATCCAGAAAAGA 32778 || ||||| || |||||||| || |||||||| || | || ||| | ||| || | Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTA-CCACTGAAAA 871738 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA--AC-CGGCGCTGTCAT 32835 | || ||||| || || ||||| || | | | || || | || || | || | Sbjct 871737 AGATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGTA- 871679 Query 32836 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 32895 ||||| | |||||| || || || || |||||||| || || || || || |||| Sbjct 871678 --ATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCAT 871621 Query 32896 TAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 32951 |||| | ||| |||||||||| || ||||| |||||||||||| || | |||| Sbjct 871620 TAAATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 116 bits (128), Expect = 5e-21 Identities = 560/876 (64%), Gaps = 21/876 (2%) Strand=Plus/Plus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| ||||| || || ||||||||||| || | || | || || || ||||| Sbjct 2512999 GCAATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGAAGTGTACTGGATAATCTCG 2513058 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 || || ||||| || | || || || | || | ||| || ||||| || || Sbjct 2513059 GTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAA 2513118 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 || ||||| || || ||| |||| |||||||| || || || || || || || || | Sbjct 2513119 GCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAAC 2513178 Query 62927 CAGACGACTCGAGCCTTTA-----TTATAGATTTGT--ATCTCTTTTCTCTTTCGTATAG 62979 |||| | || | ||||| | ||| | | | | | | ||| | | | || Sbjct 2513179 CAGAGGTCTTGTGCCTTGACCACCTTACGGGCTAATCCAGGAGTCTGCTCGTAGGAA-AG 2513237 Query 62980 TGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGG 63039 ||| | | ||| ||||| ||| || | || | ||| ||||||| ||| | || Sbjct 2513238 -GTAGAGA-TCGCG-GAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGG 2513294 Query 63040 ACACATCAACGACCACTCTCCGTCATCC--TTC-ACTCGTTTCATAAAGAGATCAGGAAT 63096 ||| | ||||||||||| || ||| | ||| || |||| |||||||||||| | | Sbjct 2513295 ACAAAACAACGACCACT---CGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATAC 2513351 Query 63097 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63156 ||| || || ||| || || | || | || || || || ||||||||||| Sbjct 2513352 CCAGAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAG 2513411 Query 63157 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63216 ||||| ||| | | ||| || || ||||| ||||| | ||| | || | | || Sbjct 2513412 GTCGAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTT 2513471 Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 | ||| ||| || || || | || | || || | ||| | || | | |||||| Sbjct 2513472 TCTCTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGG 2513531 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 | | ||| ||| ||||| ||||| || ||||||| || |||||| || || Sbjct 2513532 CACCAAACCGTTGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTT 2513591 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 | | | ||| || || || || | || || || | || ||| | || | ||| Sbjct 2513592 GTGCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGT 2513651 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG 63456 ||||| || || || || || ||| |||| | | || ||||| || ||||||| Sbjct 2513652 GTCATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTT- 2513710 Query 63457 GTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAG 63515 | | ||| | || || || ||||| | ||| || | || || ||||| | | | Sbjct 2513711 GAGGCGAGTTGGTGCCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTTG 2513770 Query 63516 AAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCG 63574 | | | | | |||||| ||||| || | ||| || || || | || || || | || | Sbjct 2513771 ACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCG-TGGATACCAAGTGAG 2513829 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 63610 |||||||| |||| ||| || || | ||| | |||| Sbjct 2513830 ACACGCATCAACAAGTGTTGGGGACGTTCGATGATC 2513865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631801990000