Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5 158 1e-33 >seq5 Length=4166812 Score = 158 bits (174), Expect = 1e-33 Identities = 184/246 (75%), Gaps = 7/246 (3%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||| ||| | ||||||||| || |||||||| ||| || || | | Sbjct 871855 CAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGA 871796 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 ||||| | || || || |||||||||||||| || ||| ||||||||| ||||| Sbjct 871795 CCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAG 871736 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGC 93269 |||||||| ||||| ||||| || || | |||||||||||| | || ||| | || Sbjct 871735 ATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTT--GGAGT---TGG 871681 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 | |||||| | |||||||| || ||||||||||| | ||| || | ||||| || || | Sbjct 871680 TAATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCAT 871621 Query 93330 TAAATA 93335 |||||| Sbjct 871620 TAAATA 871615 Score = 156 bits (172), Expect = 5e-33 Identities = 229/321 (71%), Gaps = 5/321 (2%) Strand=Plus/Minus Query 93390 TTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGA 93449 |||||||||| | ||| || || |||||||| || || ||||||||||| ||||| | | Sbjct 871473 TTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCTTCAGGTA 871414 Query 93450 TCTGCACTTCTTGAGAAAATCTCTCT-ACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || ||||| || | | || | | || ||||| ||||| |||||||| || || Sbjct 871413 TTTGAACTTC-AGACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATCAGAGGCA 871355 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTA---TCC 93565 || ||||| ||||||| || ||| ||||| || |||| || || | ||| ||| Sbjct 871354 GCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTTATTCTCC 871295 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || ||| | ||| ||| | ||| | |||||| | |||||||| ||| ||||| Sbjct 871294 CATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGCCTCTGCC 871235 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 ||||| ||||||| ||| || || ||||| |||||| |||| ||||| | || | Sbjct 871234 TTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCTATCCTTG 871175 Query 93686 TTATCTTTTAGTAACGGCTCT 93706 || ||||||| ||| || ||| Sbjct 871174 TTCTCTTTTAATAATGGTTCT 871154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860625981000