Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq21 100 2e-16 seq24 93.3 3e-14 >seq21 Length=1919465 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || |||||||| || || ||||| || | ||| |||| | Sbjct 1352608 ATGCAAATCTTTGTAAAGACATTAACCGGTAAGACCATCACTCTTGAAGTTGAAGGATCC 1352667 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | ||| || ||| || || || ||| | ||||| | Sbjct 1352668 GACACTATCGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTG---AT 1352724 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | |||||||||||||| || ||| ||||||| || |||| || |||| || Sbjct 1352725 CAACAACGTCTTATCTTTGCTGGAAAGCAATTAGAAGACGGAAGAACTTTGTCCGACTAT 1352784 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| |||||||| ||||| ||| | |||||| | ||||| || || Sbjct 1352785 AACATTCAAAAGGAATCAACTCTCCATCTCGTATTAAGATTACGTGGTGG 1352834 >seq24 Length=3408800 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| ||||||||||||| || |||||||||||| ||||| |||| | | Sbjct 193094 AATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAAGGCTC 193035 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || || | | || | ||| || ||| || || || ||| | ||||| | Sbjct 193034 TGACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTG---A 192978 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||||| | || || || || || |||||| |||| ||| | ||| | | ||||| Sbjct 192977 TCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTA 192918 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| || || |||||||| ||||| ||| | || | ||| | || || || Sbjct 192917 CAACATCCAAAAGGAATCCACTCTCCATCTCGTCCTCCGTCTCCGTGGTGG 192867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || ||||| || ||||| ||||| ||| ||||| |||| | Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || | ||| || ||| || || || ||| | ||||| | Sbjct 192577 GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTG---AT 192521 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | || |||||||| || |||||| ||||||| |||| | |||||||| Sbjct 192520 CAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTAC 192461 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || |||||||||||||| ||| | || | ||| | || || || Sbjct 192460 AACATCCAAAAGGAATCTACTCTCCATCTTGTCCTTCGTCTCCGTGGTGG 192411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124690883850