Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 190 4e-43 seq5 91.5 3e-13 >seq3 Length=2750715 Score = 190 bits (210), Expect = 4e-43 Identities = 749/1160 (65%), Gaps = 55/1160 (5%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||| |||| || || | ||||| || | ||||||||||| || |||||| Sbjct 2512078 ACGGTGAATTGGATGGCGTCGGCAGCGGCACGAGTACGGAGGTAGTACATACCAGTCTTG 2512137 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | |||||||| || ||||| | || || || | || ||||| Sbjct 2512138 AGACCCTTCTTCCAGGCGTAGAAATGCATAGAGGTGAGTTTGGCAA-----AG-TTTGGT 2512191 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 ||| ||| | ||| | ||||| ||||| || ||||||| |||| | | || Sbjct 2512192 TCG-----GCA-ATAAACACGTTGAACGACTGACTTTGGTCGATAAAGGCACCTCTGTCG 2512245 Query 243917 GCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 || ||||| ||||| || | | ||| ||||| | |||| |||||| | || Sbjct 2512246 GCAGCCATATCAATGAGTGTACGT-TGACGAATCTCCCAAGCCGACTTGTACAGCTCTTT 2512304 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 ||||| ||||||| |||| || ||| || ||||| || || | |||| ||| | Sbjct 2512305 GAGGTCGTCGGGGATACCTTGGACGTTTTGTACCGACCCACGGTTAGCAATGATTTGGTT 2512364 Query 244036 GCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC-AGCGCCTCGACCAGGTGCCTGTTCA 244094 ||| | |||||| || ||| || || ||| || || ||| |||| | Sbjct 2512365 CTTCATTTCGGGAGTCCACAAACC-AAGTGCCATGAGATCCTGGAGCAATTGCTTGTTGA 2512423 Query 244095 CCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGA 244154 | || |||||| || | || || |||| ||| | |||||| || || || | Sbjct 2512424 CGACGGTAAACTCGCCGGCCAAGACCTTGCGCGAGTAAATGTTGCTAGTGTATGGTTCAA 2512483 Query 244155 TGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCA 244214 | ||| ||||||| || ||||| | ||| || || |||||||| | || |||| Sbjct 2512484 AACACTCATTGTTGCCGAGAATCTGTGAGGTGGATGCTGTTGGCATGGGTGCGACGAGCA 2512543 Query 244215 GACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGC 244274 ||| | | ||||| | ||| || || |||| || ||||||||| | Sbjct 2512544 ACGAGTTACGTAGACCGTGTTTGACGATACGTTGTTTGAGAGCGGCCCAGTCCCAACGGG 2512603 Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGG 244334 | ||| | ||| || ||||||||||||| || || | || ||| | | Sbjct 2512604 C--AGATG-------GTTGGACATCCCACATGTCAAATTGTAGGATACC-TTGGGAAGCG 2512653 Query 244335 GGCTGCCCT-CGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCG 244393 ||| ||| | ||||| ||| ||||||||||||| ||||| | ||| |||| Sbjct 2512654 GGCGAACCTGCAAAGGTCTCGTATGGACCGTCGCGCTCGGCCAATTGACACGATGCGTCA 2512713 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 |||| || ||||||||||| ||| ||| |||||| | | || ||| || | Sbjct 2512714 AGGGAAGCATAGTAGATGGTTTCGGCAATCTCCTTGTTGAGGACGGCGGCA-----GCTG 2512768 Query 244454 GTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 |||| | || || | | || ||||||||||||| || || | || |||| Sbjct 2512769 GTGAGTCAAATGGCATACGGAGAGCGATAAAGACGTCGGCCAAACCTTGAATTCCAATGC 2512828 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 || | || | || ||| ||||||| || ||||| || ||||| || || | || Sbjct 2512829 CGGTTGGACGATGACGCATGTTGGAACGACGAGCTTCTTCGACTGGGTAGAAATTACGGT 2512888 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 | || | |||||||||||| || || || || ||| || ||||| || | | | || Sbjct 2512889 CAATGATCTTGTTGAGGTTACGTGTAATGATACGGGTGATTTCGGCGAGATGGTTATGGT 2512948 Query 244629 CGTACTCGTAGGGATCCTCGGC-GATGGTGATCCTC-----ACAAACTCGTTG--AGGGC 244680 | | | || || |||| ||||| || | | ||||||| ||| || || Sbjct 2512949 CAAAT--GAAGCGA----CGGCCGATGGCGAACTACGCTTGACAAACT--TTGGTAGAGC 2513000 Query 244681 GA-CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGG 244739 | || || | |||||||| ||||| || || || | |||||||||| |||||||| Sbjct 2513001 AATCGATG-CAAGGTTGCAAACGGCTACTTCGTCGGCTGAAGTGTACTGGATAATCTCGG 2513059 Query 244740 TGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGG 244799 | ||||| || ||| | || ||||| |||| || || |||||||| | ||||| | Sbjct 2513060 TACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAAG 2513119 Query 244800 CGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCC 244859 ||||||||||||| ||| | || || ||||||| || | | ||| || | || Sbjct 2513120 CGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAACC 2513179 Query 244860 AGAGGTCCCTAGCCTTGACC 244879 ||||||| ||||||||| Sbjct 2513180 AGAGGTCTTGTGCCTTGACC 2513199 >seq5 Length=4166812 Score = 91.5 bits (100), Expect = 3e-13 Identities = 173/252 (69%), Gaps = 11/252 (4%) Strand=Plus/Plus Query 42612 TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG 42671 || || || || || || || || || | ||||| || || |||||||| | | ||| Sbjct 871617 TTTAATGCAATTGAAACTATTCCATGTGTAAAGAAAAAAGCTGACTGGGCTTTGAGATGG 871676 Query 42672 ATCGAGAGTCCCGACGCAA---CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 || | || || | | |||| | ||| | ||||||| ||| ||||||| || Sbjct 871677 AT------TACCAACTCCAAGTCGTTTGCCGAACGTTTGGTAGCTTTTGCCGCCGTTGAA 871730 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCGAT 42787 || ||||| ||| || ||| || ||||| ||||||||| || ||| || || Sbjct 871731 GGTATCTTTTTCAGTGGTAGTTTCTGTTCGATCTTTTGGCTCAAGAAGCGTGGTCTC-AT 871789 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || |||||||| || ||||| | ||||| | ||||| || || ||| | ||||| Sbjct 871790 GCCAGGTCTCACCTTTTCCAACGAGTTGATCAGTCGTGACGAAGGTCTCCATTGCGACTT 871849 Query 42848 TGCCTGCCTCCT 42859 |||||| || || Sbjct 871850 TGCCTGTCTTCT 871861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338904894000