Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq21 152 1e-31 seq24 143 6e-29 >seq21 Length=1919465 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | || ||| |||||||| ||||| |||| Sbjct 1352378 CCACCACGGAGACGGAGGACGAGATGGAGAGTTGATTCCTTTTGGATGTTATAATCGGAA 1352319 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || |||||||||||||||||||| ||||| ||||| | | |||||| | ||| Sbjct 1352318 AGAGTACGTCCGTCTTCTAATTGTTTACCTGCAAAGATTAATCTTTGTTGATCAGGTGGA 1352259 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || ||||| || || || || ||||| |||| ||| ||| ||| Sbjct 1352258 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGATCCTTCGACT 1352199 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || |||||||| || || ||||| Sbjct 1352198 TCGAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1352152 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| |||||||| | || ||| ||||| || |||||||||| Sbjct 1352606 CCACCACGGAGACGAAGGACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAC 1352547 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | |||||||||||||||||| || || || || ||||| |||||| | ||| Sbjct 1352546 AAAGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGA 1352487 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || || || |||||||| || | |||| ||| ||| Sbjct 1352486 ATACCTTCCTTGTCTTGAATCTTGGCCTTTACGTTTTCAATGGTATCGGATCCTTCCACT 1352427 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || || ||||||||||| || ||||| Sbjct 1352426 TCCAAAGTGATAGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1352380 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| || |||||||| || ||||||| Sbjct 1444887 CCACCACGGAGACGGAGGACAAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAA 1444828 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||||||||||||||||| || || ||||| ||||| |||||| | ||| Sbjct 1444827 AGAGTTCTGCCGTCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGA 1444768 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA---TTCT 288423 || ||||| || || || || || | || |||||||| || | || ||| ||| Sbjct 1444767 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTTTCAATGGTGTC---CGAACCTTCG 1444711 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||| ||||| ||||| || || || |||||||| || || ||||| Sbjct 1444710 ACTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 1444661 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || | ||| | ||||||||| | || ||| ||||| || |||||||||| Sbjct 1352834 CCACCACGTAATCTTAATACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGAC 1352775 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||||||||||||||| ||||| || ||||| ||||| |||||| | ||| Sbjct 1352774 AAAGTTCTTCCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGA 1352715 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || || || || || || |||| ||| ||| ||| Sbjct 1352714 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCGATAGTGTCGGATCCTTCAACT 1352655 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| | ||||| || || || ||||| Sbjct 1352654 TCAAGAGTGATGGTCTTACCGGTTAATGTCTTTACAAAGATTTGCAT 1352608 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| || || ||||| || |||||||||| Sbjct 1352150 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGAT 1352091 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| |||||||||||||| ||||| || ||||| ||||| |||||| | |||| Sbjct 1352090 AAAGTGCGACCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 1352031 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTAC 288425 || ||||| || || || || || || || || ||||| || | ||| | || ||| || Sbjct 1352030 ATACCTTCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATGGTATCAGATC-CTTCAAC 1351972 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || ||||| || || || || ||||| Sbjct 1351971 CTCCAAGGTGATGGTCTTACCAGTAAGAGTTTTTACAAAAATTTGCAT 1351924 >seq24 Length=3408800 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| ||| |||||||| || ||||| | Sbjct 192639 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCCGAC 192698 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||||||||||||||||| || || ||||| ||||| |||||| | |||| Sbjct 192699 AAAGTTCTGCCGTCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGG 192758 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || || ||||| |||| ||| ||| ||| Sbjct 192759 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCGGATCCTTCGACT 192818 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || |||||||| || || ||||| Sbjct 192819 TCGAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAAATTTGCAT 192865 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || ||||| | || ||| |||||||| || || |||| Sbjct 192411 CCACCACGGAGACGAAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAA 192470 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||||||||||||||| || || ||||| ||||| |||||| | |||| Sbjct 192471 AGAGTTCGGCCGTCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGATCAGGTGGG 192530 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || || ||||| |||| || ||| ||| Sbjct 192531 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAACCTTCGACT 192590 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||||| |||||||| || || ||||| Sbjct 192591 TCCAAGGTGATGGTCTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 192637 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| ||| ||||| || || || || | | Sbjct 191954 CCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAG 192013 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||| || || ||||| ||||| |||||| | |||| Sbjct 192014 AGGGTTCTGCCATCCTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGG 192073 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || |||||||| || | ||| ||| ||| Sbjct 192074 ATACCTTCCTTGTCTTGAATCTTGGTCTTAACGTTTTCAATGGTGTCGGATCCTTCGACT 192133 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || |||| |||||||| || |||||||| Sbjct 192134 TCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACAAAGATCTGCAT 192180 Score = 123 bits (136), Expect = 6e-23 Identities = 167/229 (73%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| ||| |||||||| || || || | | Sbjct 192182 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGAG 192241 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||| || ||||| || ||||| |||||| | |||| Sbjct 192242 AGGGTTCTACCATCCTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGG 192301 Query 288367 ATTCCTT-CTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTA 288424 || |||| | || || ||||| || | || || ||||| || | || | || || | Sbjct 192302 ATACCTTCCCTTGTCTTGGATCTTGGTCTTGACATTTTCAATGGTGTCAGATC-CCTCGA 192360 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| || ||||| ||||| || || || |||||||| || || ||||| Sbjct 192361 CTTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 192409 Score = 111 bits (122), Expect = 4e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | ||| ||| |||||||| || || || | | Sbjct 192867 CCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGAG 192926 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || ||||||||||| || ||||| || ||||| |||||| | |||| Sbjct 192927 AGGGTTCTACCATCCTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGG 192986 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || || | || || ||||| |||| || ||||||| Sbjct 192987 ATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAGCCTTCTACT 193046 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATT 288482 || | || || || || || || | || || || || || |||||| | || || Sbjct 193047 TCCAAGGTAATGGTTTTACCTGTTAATGTTTTAACAAAGATTTGCATTGTTTTTTT 193102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654022141950