Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq21 118 1e-21 seq5 116 4e-21 seq24 102 8e-17 >seq21 Length=1919465 Score = 118 bits (130), Expect = 1e-21 Identities = 176/245 (72%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | ||||||||||||||||||| |||||| Sbjct 1352150 CCACCACGGAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGAT 1352091 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || | ||| || || | | |||| ||||| ||||| || || || Sbjct 1352090 AAAGTGCGACCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 1352031 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| | || | |||| | ||| | ||| || | || || Sbjct 1352030 ATACCTTCCTTGTC-TTGAATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAAC 1351972 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAAT-A 138625 ||| | || | || |||||||| ||||||||||||||||| |||||| || |||| | Sbjct 1351971 CTCCAAGGTGATGGTCTTACCAGTAAGAGTTTTTACAAAAATTTGCATG--TTTTAATAA 1351914 Query 138626 TTATT 138630 ||||| Sbjct 1351913 TTATT 1351909 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||||||||| |||||| || ||| | ||| || | ||||||||||| Sbjct 1352575 TTGATTCCTTTTGAATGTTATAGTCGGACAAAGTTCTTCCGTCTTCTAATTGTTTACCGG 1352516 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537 | | || ||||| ||||| || || || |||||||| ||||| ||| | || | ||| Sbjct 1352515 CAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCT-TGAATCTTGGCCTTT 1352457 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | ||| | ||| |||| ||||| || | || | ||||||||||| || || Sbjct 1352456 ACGTTTTCAATGGTATCGGATCCTTCCACTTCCAAAGTGATAGTTTTACCAGTGAGGGTC 1352397 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||| ||||| Sbjct 1352396 TTGACGAAAATTTGCAT 1352380 Score = 102 bits (112), Expect = 8e-17 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||||||||| || || ||| | ||| || | ||||||||||| | Sbjct 1444398 GATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTGTTTACCGGCA 1444339 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || ||||| ||||| || || || |||||||| ||||| ||| || || | Sbjct 1444338 AAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTCTTGACA 1444279 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | || ||||| | || | || |||||||| | ||||||| Sbjct 1444278 TTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTT 1444219 Query 138601 ACAAAAATCTGCATGGCTT-ATAATATTATT 138630 |||||||| |||||| || || ||||||| Sbjct 1444218 ACAAAAATTTGCATGATTTGTTACTATTATT 1444188 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | ||| | ||| || | ||||||||||| | Sbjct 1444854 GACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCTAATTGTTTACCGGCA 1444795 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||| ||||| ||||| || || || |||||||| ||||| ||| | || || || | Sbjct 1444794 AAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTC-TTGAATCTTGGTCTTGAC 1444736 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | |||||| | || || |||| || | || |||||||| || || || Sbjct 1444735 GTTTTCAATGGTGTCCGAACCTTCGACTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTT 1444676 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 1444675 GACAAAGATTTGCAT 1444661 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||||||||| || || ||| | ||| || | ||||||||||| | Sbjct 1445082 GATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTGTTTACCGGCA 1445023 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 | || ||||| ||||| || || || |||||||| ||||| ||| | || || || | Sbjct 1445022 AAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTC-TTGAATCTTGGTCTTGAC 1444964 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| || || | || | || |||||||| || || || Sbjct 1444963 ATTCTCAATGGTGTCAGATCCCTCAACTTCAAGAGTGATGGTCTTACCAGTGAGGGTCTT 1444904 Query 138600 TACAAAAATCTGCAT 138614 |||||| || ||||| Sbjct 1444903 TACAAAGATTTGCAT 1444889 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | ||| | ||| ||||| || || || | | Sbjct 1445310 GACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCGAGCTGCTTTCCAGCA 1445251 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| ||||| || || || |||||||| ||||| ||| || ||| | Sbjct 1445250 AAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTTTTGACA 1445191 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | ||| || || | || | || |||||||| | || ||| Sbjct 1445190 TTTTCAATGGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTACCAGTTAATGTCTTT 1445131 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 1445130 ACAAAGATTTGCAT 1445117 >seq5 Length=4166812 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | ||||| ||| |||||||| ||||||| | Sbjct 207577 GACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCGAGTTGCTTACCGGCA 207518 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| |||||||| || || |||||||| ||||| ||| || || | Sbjct 207517 AAGATAAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACG 207458 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||||| ||| ||||| | || | || ||||| || || ||||| Sbjct 207457 TTTTCGATAGTGTCGGAACCCTCTACCTCTAAGGTAATGGTCTTACCTGTGAGTGTTTTA 207398 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 207397 ACGAAGATCTGCAT 207384 >seq24 Length=3408800 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| || ||| | ||| || | ||||||||||| | Sbjct 192672 GATTCCTTTTGGATGTTGTAGTCCGACAAAGTTCTGCCGTCTTCTAATTGTTTACCGGCA 192731 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTAA 138539 |||| ||||| ||||| || || || |||||||| ||||| ||| | || || || | Sbjct 192732 AAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTC-TTGAATCTTGGTCTTGAC 192790 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||||| || || |||| || | || |||||||| || || || Sbjct 192791 ATTTTCGATAGTGTCGGATCCTTCGACTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTT 192850 Query 138600 TACAAAAATCTGCAT 138614 |||||||| ||||| Sbjct 192851 GACAAAAATTTGCAT 192865 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGA 138479 || ||||||||||||||||| || | || | || | ||||| | ||||||||||| Sbjct 191987 GATTCCTTTTGAATGTTGTAATCCGAGAGGGTTCTGCCA-TCCTCTAATTGTTTACCGGC 192045 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA 138539 | |||| ||||| ||||| || || || |||||||| ||||| ||| | || || |||| Sbjct 192046 AAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTC-TTGAATCTTGGTCTTAA 192104 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | ||| | |||||||| || || || | || | || |||||||||| || | Sbjct 192105 CGTTTTCAATGGTGTCGGATCCTTCGACTTCAAGAGTGATGGTCTTACCAGTCAATGTCT 192164 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 192165 TGACAAAGATCTGCAT 192180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262244918000