Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 203 4e-47 seq5 105 8e-18 seq1 84.2 3e-11 >seq3 Length=2750715 Score = 203 bits (224), Expect = 4e-47 Identities = 1138/1785 (64%), Gaps = 64/1785 (4%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || |||||||| |||| ||||||||| || | |||||| |||| Sbjct 2512114 CGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAGGTG 2512173 Query 115618 AACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 115676 | |||| | ||| |||| | || || | ||| | || ||| ||||| || Sbjct 2512174 AGTTTGGCAAAGT-TTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATAAA 2512232 Query 115677 GCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGA----TTTCCCACACAG 115732 | || | || || ||||||||||| | | | |||| | ||||| | | Sbjct 2512233 GGCACCTCTGTCGGCAGCCATATCAATGAG----TGTACGTTGACGAATCTCCCAAGCCG 2512288 Query 115733 TTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTG 115792 |||| || | || | || || |||||| | || ||||| | || |||| Sbjct 2512289 ACTTGTACAGCTCTTTGAGGTCGTCGGGGATACCTTGGACGTTTTGTACCGACCCACGG- 2512347 Query 115793 CCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT 115849 || | |||| | | |||||| || | ||| | ||||| | ||||||||| Sbjct 2512348 --TTAGCAATGATTTGGTTCTTCATTTCGGGAGTCCACAAACCAAGTGCCATGAGATCCT 2512405 Query 115850 CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGG---TGCGTCTCAGATAGA 115906 | | ||||| ||||| || |||||| || || | | |||| || || | Sbjct 2512406 GGAGCAATTGCTTGTTGACGACGGTAAACTCGCCGGCCAAGACCTTGCGCG--AG-TAAA 2512462 Query 115907 TGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 115966 ||||| | |||||||| ||||| ||||||||||| || | || || | ||||| |||| Sbjct 2512463 TGTTGCTAGTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTGAGGTGGATGCTG 2512522 Query 115967 TGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGA 116026 | ||||||||||| | ||| | ||| || ||||| || |||| |||| Sbjct 2512523 TTGGCATGGGTGCGACGAGCAACGAGTTACGTAGACCGTGTTTGACGATACGTTGTTTGA 2512582 Query 116027 GGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATAC 116086 | ||| ||||||| | | || | | |||||||| ||||| || ||||||| Sbjct 2512583 GAGCGGCCCAGTCCCAACGGGCAGATGGTTGGACATCCCACATGTCAAATTGTAGGATAC 2512642 Query 116087 CTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGG 116146 ||||||| || ||||| || |||| ||||| ||||| || || ||| ||||||| Sbjct 2512643 CTTGGGAAGCGGGCGAACCTGCAAAGGTCTCGTATGGACCGTCGCGCTCGGCCAATTGAC 2512702 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG 116206 | || || |||| || | || || || || ||| || | | || Sbjct 2512703 ACGATGCGTCAAGGGAAGCATAGTAGATGGTTTCGGCAATCTCCTTGTTGAGGACGGCGG 2512762 Query 116207 C--CTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 | || || || ||||| | | |||| ||||| || || || | |||||| | Sbjct 2512763 CAGCTGGT--GAGTCAAATGGCATACGGAGAGCGATAAAGACGTCGGCCAAACCTTGAAT 2512820 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324 || | ||| |||| ||||| | ||| || || ||||| || || || || || Sbjct 2512821 TCCAATGCCGGTTGGACGATGACGCATGTTGGAACGACGAGCTTCTTCGACTGGGTAGAA 2512880 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT---GAAG 116381 ||| | || || | | | || || || || | | |||||||| || | Sbjct 2512881 ATTACGGTCAATGATCTTGTTGAGGTTACGTGTAATGATACGGGTGATTTCGGCGAGATG 2512940 Query 116382 CTTTTCGT--AATCAAA--ACTGC-GA-GTCT--CTTCA-TTGACATACTTAGGAAGGGC 116432 || | || ||| || || || || | | || | |||||| |||| || || || Sbjct 2512941 GTTATGGTCAAATGAAGCGACGGCCGATGGCGAACTACGCTTGACAAACTTTGGTAGAGC 2513000 Query 116433 GATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAATTTCC 116490 || || || || || || || | || || || | |||||||| ||||| || Sbjct 2513001 AATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGA--AGTGTACTGGATAATCTCG 2513058 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 ||||| | ||| || | | ||| ||||| | ||||||||| || |||||| || || Sbjct 2513059 GTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAA 2513118 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || ||||||||||| || ||||| || || ||||| |||| || | || || || | Sbjct 2513119 GCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAAC 2513178 Query 116611 CATACATCG-GCGGCTGGCACAG-TGGCGTTGGCTCGCCCCTC---CTCCTCGTACTTTG 116665 || | || | | || | || | || |||| || || |||||| Sbjct 2513179 CAGAGGTCTTGTGCCTTGACCACCTTACG--GGCTAATCCAGGAGTCTGCTCGTAGGAAA 2513236 Query 116666 TGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAGCCCTGGTGCCTTATCTGGA 116724 |||||| | |||| || || ||| || | | || || || | | |||| Sbjct 2513237 GGTAGAGATCGCGGAACTTGTCGCCGT-AGCAATCGGCCAATCCAGGAGCTTCGTTTGGA 2513295 Query 116725 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 116784 || || | ||||| | || || || || || | ||| ||||| || | | |||| Sbjct 2513296 CAAAACAACGACCACTCGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATACCCAG 2513355 Query 116785 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 116844 || || | ||||| || || || ||||| | || || || | || Sbjct 2513356 AGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGTCG 2513415 Query 116845 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGA 116904 | ||| || | || |||| |||||| ||||| ||||| || || | | ||||| | Sbjct 2513416 AGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTCTC 2513475 Query 116905 ---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 | ||| | |||| ||||| | || || ||||||| || || |||||||| | Sbjct 2513476 TTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCACC 2513535 Query 116962 ATACCATCAGATTGG-CCATTTGTCCCCCGAATACGAGACTTGTT-GGCTCTGACATCGT 117019 | ||| | | | | || || || || || ||| || | || ||| | || | || Sbjct 2513536 AAACCGTT-GCTAGTACCGTTGGTTCCACGGATATAGGA-TCGTGCGGCACGGATCTTGT 2513593 Query 117020 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGC 117079 | | | ||||||||||| || || | ||| || || | || || | | |||| || Sbjct 2513594 GCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGT 2513653 Query 117080 CGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAGGAAGCAGCTCGACATTTGT 117138 | || || || ||||||||||| |||| || ||| | |||||| || ||||||||||| Sbjct 2513654 CATAAATACCTTCGATCGAGTCGTCCTTCATCTGC-ACGAGGAAACAACTCGACATTTGA 2513712 Query 117139 GGC--CTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGG 117196 ||| |||||| |||||||| ||||||||||| || || || | || || | | Sbjct 2513713 GGCGAGTTGGTG--CCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTTG 2513770 Query 117197 ACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGA 117256 ||| | ||||| || || | | ||| | |||||| || ||||| ||||| | ||||| Sbjct 2513771 ACAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCGTGGATACCAAGTGAGA 2513830 Query 117257 CCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGA 117301 | ||||| |||| || |||||| ||| || | ||| ||| || Sbjct 2513831 CACGCATCAACAAGTGTTGGGGACGTTCGATGATCATATCATTGA 2513875 >seq5 Length=4166812 Score = 105 bits (116), Expect = 8e-18 Identities = 185/269 (69%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||| |||||||| ||| | || || || ||| ||||||||||||||||| Sbjct 871840 TGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGACCTGGCATGAGACCA 871781 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | ||| || |||| ||| || ||| ||| ||||| || || || Sbjct 871780 CGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGATACCTTCAACGGCG 871721 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | | ||| |||||||| || ||| || || || ||| ||| ||| Sbjct 871720 GCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGT---AATCCATCTCAAAGCC 871664 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 127771 || | || ||||||| | |||||| | || | || || | ||| | | |||| ||| Sbjct 871663 CAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTAAATAATACCTTTTTT 871604 Query 127772 TCTGATGGATCTTTGATGTACTTATCTAT 127800 || ||||| ||| || || |||| || Sbjct 871603 TCATCTGGATTTTTAATATATGTATCAAT 871575 >seq1 Length=2485436 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 176608 TGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATC 176667 ||||||||| ||||| || | ||| | ||||||||||| || ||||||||||| ||||| Sbjct 2083949 TGGCCAGAAATAGTGAATAAAATTAATAATGAGACCCTTGATATGTGAACCATCATTATC 2084008 Query 176668 CGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTC 176706 ||| ||||||||||| | | ||||| ||||| || Sbjct 2084009 TTGATCAGTCATAATCATAATCTTTCCATAACGAAGGTC 2084047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507008279000