Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 4e-15 seq21 87.8 2e-12 seq24 84.2 2e-11 >seq5 Length=4166812 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| |||||||||||| ||||||||||| || || || |||| ||| Sbjct 207592 ACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCG 207533 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| ||||| || || | || || ||||| | || | | |||||||| | Sbjct 207532 AGTTGCTTACCGGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 207473 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||| || || || | || ||||| || Sbjct 207472 ATCTTAGCCTTGACGTTTTCGATAGTGTCGGAACCCTCTACCTCTAAGGTAATGGTCTTA 207413 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTT 46595 || || || |||||||| ||||| ||||||| Sbjct 207412 CCTGTGAGTGTTTTAACGAAGATCTGCATTT 207382 >seq21 Length=1919465 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||| || || | ||| | |||| |||||||||||||| || || Sbjct 1444623 TCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCGAGCTGCTTGCCAGCAAAG 1444564 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || || | || | | |||||||| |||||| |||||| || Sbjct 1444563 ATAAGACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTC 1444504 Query 46523 GCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || || || || | |||||||| ||||| |||| || || || Sbjct 1444503 TCGATAGTGTCAGATC-CCTCGACTTCAAGAGTGATGGTCTTGCCGGTCAATGTCTTGAC 1444445 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 1444444 AAAGATTTGCAT 1444433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| ||||| | |||| ||||||||||| || || || Sbjct 1445308 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCGAGCTGCTTTCCAGCAAA 1445249 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || || | || | | |||||||| |||||| | |||| | Sbjct 1445248 GATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGTTTTGACATT 1445189 Query 46522 CGCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | ||||| | || || || || | |||||||| || || || | || || | Sbjct 1445188 TTCAATGGTGTCAGATC-CCTCGACTTCAAGAGTGATGGTCTTACCAGTTAATGTCTTTA 1445130 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 1445129 CAAAGATTTGCAT 1445117 >seq24 Length=3408800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||||||||| ||||| ||||| ||||| || |||| || Sbjct 192429 ACAAGATGGAGAGTAGATTCCTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCT 192488 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | || || ||||| || || | || || || || | || | | |||||||| Sbjct 192489 AATTGTTTACCGGCAAAGATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGA 192548 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | ||||| ||| || |||| |||||||| ||| Sbjct 192549 ATCTTGGTCTTGACATTTTCGATAGTGTCAGAACCTTCGACTTCCAAGGTGATGGTCTTG 192608 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || |||||||||||||| Sbjct 192609 CCGGTCAATGTCTTGACAAAGATTTGCAT 192637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238223363000