Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5 113 5e-20 seq21 95.1 1e-14 seq24 93.3 4e-14 seq2 87.8 2e-12 >seq5 Length=4166812 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38242 aaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || ||||| ||||| ||||| || || ||||| ||| | || || |||| Sbjct 207382 AAATGCAGATCTTCGTTAAAACACTCACAGGTAAGACCATTACCTTAGAGGTAGAGGGTT 207441 Query 38302 CCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | ||||| | || | || |||| ||||| || || || || | ||| Sbjct 207442 CCGACACTATCGAAAACG-TCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 207500 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || || || | || || || || || || |||| || |||||| ||||||| Sbjct 207501 CAACAACGTCTTATCTTTGCCGGTAAGCAACTCGAAGACGGTCGTACCCTCTCCGACTAC 207560 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || || ||| | || || ||| Sbjct 207561 AACATCCAAAAGGAGTCTACTCTCCATCTCGTCCTCCGT 207599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 133282 AGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAA 133341 || ||||||||||| || || || ||| ||||||||||||| || | |||||| || Sbjct 871384 AGGTTTTCGTTGACAATACCATCAGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAG 871325 Query 133342 TGGCGCTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || || || ||||| ||||| |||||| ||| || | | || || | | Sbjct 871324 TGACGTTCATTGTCATTCAATTTATTCTCCCATTCGTTGACATCACTTGCCAAATCAATC 871265 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATAT 133458 || ||| | |||||||| ||||| || ||||| |||||| |||| || || | |||| Sbjct 871264 TCTTCGGCTGTCCAAAAGCTTGCCTCTGCCTTTTTATACATATTCCAAATATCGGTATAT 871205 Query 133459 TGTATGGGAAAAATCACAAA 133478 | || || || | ||||| Sbjct 871204 TTAATTGGGAATAGAACAAA 871185 >seq21 Length=1919465 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || ||||||||| |||| ||||| | | Sbjct 1444661 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGTTCG 1444720 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | ||||| | |||| || || | ||||| || || ||||| | || | Sbjct 1444721 GACACCATTGAAAACG--TCAAGACCAAGATTCAAGACAAGGAAGGTATTCCACCTGATC 1444778 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || || || | || || ||||| | || |||| | || || |||||||| Sbjct 1444779 AACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTCTTTCCGACTACA 1444838 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || ||| | || || ||| Sbjct 1444839 ACATCCAAAAGGAGTCCACTCTCCATCTTGTCCTCCGT 1444876 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || ||||| || | || || || |||||||| | || ||||||| | Sbjct 1445117 ATGCAAATCTTTGTAAAGACATTAACTGGTAAGACCATCACTCTTGAAGTCGAGGGATCT 1445176 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | ||| || |||| ||||| || || ||||| | || ||| Sbjct 1445177 GACACCATTGAAAATGTCAAAACCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1445236 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | || || || ||||| || |||| | || || |||||||||| Sbjct 1445237 CAACGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCAGAACTCTTTCCGACTACAAC 1445296 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| | || || ||| | || || ||| Sbjct 1445297 ATCCAAAAGGAGTCCACTCTCCATCTCGTCCTCCGT 1445332 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| || |||||| |||| ||||| | || Sbjct 1352152 ATGCAAATCTTTGTCAAGACCCTCACTGGCAAGACAATCACCCTCGAAGTCGAAGGATCC 1352211 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| ||||| || || ||||| | || ||| Sbjct 1352212 GACACTATCGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1352271 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | || | || || ||||| | || |||| || || || ||| || ||| Sbjct 1352272 CAAAGATTAATCTTTGCAGGTAAACAATTAGAAGACGGACGTACTCTTTCCGATTATAAC 1352331 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||| | || || ||| Sbjct 1352332 ATCCAAAAGGAATCAACTCTCCATCTCGTCCTCCGT 1352367 >seq24 Length=3408800 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/219 (71%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || |||||||| | || ||||||| | Sbjct 192409 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAGACCATCACTCTTGAAGTCGAGGGATCT 192350 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAG-AGGGAATTCCCGCCGAC 38360 |||| | | | ||| | | |||| || |||| ||||| | | || || || | || Sbjct 192349 GACACCATTGAAAATG--TCAAGACCAAGATCCAAGACAAGGGAAGGTATCCCACCTGAT 192292 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || ||||||| ||| || ||||| | || || | | |||||| || ||| Sbjct 192291 CAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTAC 192232 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||||| | || || ||| | || || ||| Sbjct 192231 AACATCCAAAAGGAATCCACTCTCCATCTCGTCCTCCGT 192193 Score = 93.3 bits (102), Expect = 4e-14 Identities = 157/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 |||| ||||||||| || || ||||| | || || |||||||| ||| | || || || Sbjct 193099 AAAACAATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAA 193040 Query 38298 GCCACCGACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCG 38355 | | | |||| | | ||| | | |||| || || | ||||| || || || || Sbjct 193039 GGCTCTGACACTATCGAAAATG--TCAAGACCAAGATTCAAGACAAGGAAGGTATCCCAC 192982 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 | || ||||| || ||||||| ||| || ||||| | || || | | |||||| | Sbjct 192981 CTGATCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGG 192922 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | |||||||||||||||||| | || || ||| | || || ||| Sbjct 192921 ATTACAACATCCAAAAGGAATCCACTCTCCATCTCGTCCTCCGT 192878 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| ||||||||| | || ||||| | | Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||| | | |||| || || | ||||| || || || || | || | Sbjct 192577 GACACTATCGAAAATG--TCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATC 192520 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || ||||| | || || ||||| | || |||| || || || ||| |||| Sbjct 192519 AACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTACA 192460 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || || ||| | || || ||| Sbjct 192459 ACATCCAAAAGGAATCTACTCTCCATCTTGTCCTTCGT 192422 Score = 82.4 bits (90), Expect = 8e-11 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || ||||||||| |||| ||||| | || Sbjct 192865 ATGCAAATTTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGATCC 192806 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||| | | |||| || || | ||||| || || || || | || | Sbjct 192805 GACACTATCGAAAATG--TCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATC 192748 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||| || || || | || || ||||| | || |||| | || | ||||||| Sbjct 192747 AACAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTTTGTCGGACTACA 192688 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || || ||| | || || ||| Sbjct 192687 ACATCCAAAAGGAATCCACTCTCCATCTCGTCCTCCGT 192650 >seq2 Length=1770755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || | || || || |||||||| | || || || | Sbjct 949053 AAACATGCAGATCTTCGTTAAGACTTTAACAGGAAAGACCATCACTCTTGAAGTTGAAGG 948994 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | || | | | | ||||| | || | || |||| ||||| || || || || ||| Sbjct 948993 TTCAGATACCATCGAAAACG-TCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCCG 948935 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | ||||| || || || | || || || || || || |||| || |||||| || | Sbjct 948934 ATCAACAACGTCTTATCTTTGCCGGTAAGCAACTCGAAGACGGTCGTACCCTCTCGGATT 948875 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||||| | || || ||| | || || || | ||||| || Sbjct 948874 ACAACATCCAAAAGGAATCTACCCTCCATCTCGTTCTCCGCCTTAGAGGTGG 948823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172643696000