Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 226 4e-54 seq5 129 7e-25 seq9 89.7 6e-13 >seq3 Length=2750715 Score = 226 bits (250), Expect = 4e-54 Identities = 1127/1759 (64%), Gaps = 72/1759 (4%) Strand=Plus/Minus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 || |||| ||||| ||| | | |||||||| || || || ||||| ||| | || | Sbjct 2513845 ACTTGTTGATGCGTGTCTCACTTGGTATCCACGGTGACGACATTGACGCTGCCATTGACA 2513786 Query 111679 CATACGACAAGATGTC---CCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735 | |||||| | |||| |||| || || | || || || ||||||||||| |||| Sbjct 2513785 CGTACGACCAATTGTCAAACCGT--TACTTT-ACGCATGCCACCCCAACCCTCTTTAACG 2513729 Query 111736 CTGGTACACCAAGACCCC--AAATGTCCAGTTGTTTCCTTATTGCAAAC-AAGGAGGATT 111792 |||| |||||| | || ||||||| ||||||||||| | ||| | ||||| || | Sbjct 2513728 CTGG--CACCAACTCGCCTCAAATGTCGAGTTGTTTCCTCGT-GCAGATGAAGGACGACT 2513672 Query 111793 CAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTG 111852 | ||| | || ||||| | ||| |||| ||||||||| || || ||| | || |||| Sbjct 2513671 CGATCGAAGGTATTTATGACACGCTCAAGCAATGTGCCCTCATTTCCAAGAGTGCCGGTG 2513612 Query 111853 GTATCGGGATGCACATCCATGATGTCAGAGCCAACAAG-TCTCGTATTAGAGGTACAAAT 111911 |||| || || | | || | || | ||| || | || ||| | || || || Sbjct 2513611 GTATTGGTATCGCCGTGCACAAGATCCGTGCCG-CACGATCCTATATCCGTGGAACCAAC 2513553 Query 111912 GGT-CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| | | || | ||| | | |||||||| || || ||||||| || || || ||||| Sbjct 2513552 GGTACTAGCA-ACGGTTTGGTGCCAATGCTACGTGTGTTTAACGATACTGCCCGTTATGT 2513494 Query 111971 AAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||||| ||| | | ||||| | | || ||||| || || ||||||||| | Sbjct 2513493 CGACCAAGGTGGAGGCAAGAGAAAGGGTGCGTTTGCTGTCTACCTCGAACCATGGCACTC 2513434 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087 ||| || | ||||| || || | ||||| ||| | || ||| ||| ||| Sbjct 2513433 GGACATTTTCGAGTTTCTCGACCTTAAAAAGAACCACGGTAAAGAAGAGATGCGTGCCCG 2513374 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 || ||||| | ||| |||||| | | |||||||| ||| | | || || ||| || Sbjct 2513373 TGACCTCTTTTACGCACTCTGGGTATCCGATCTCTTTATGGAACGTGTCGAACAGAATGC 2513314 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207 | | ||||| | ||||||||| || | || || || | ||||| | || || | Sbjct 2513313 CGAGTGGTCGTTGTTTTGTCCAAACGAAGCTCCTGGATTGGCCGATTGCTACGGCGACAA 2513254 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGGTGC-CA 112265 ||| | |||||| |||||| | || || | || | |||| || Sbjct 2513253 GTTCCGCGATCTCTACCTTTCCTACGAGCA-GACTCCTGGATTAGCCCGTAAGGTGGTCA 2513195 Query 112266 --GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 || || | ||| || || || | || |||| |||||||||||| ||||| | Sbjct 2513194 AGGCACAAGACCTCTGGTTTGCCATCATCGACTCGCAAATCGAGACTGGTACCCCATACA 2513135 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAAT-TTGGGTGTGATCAAG 112382 | || ||||| ||||| || || ||||| || |||||||| |||| | |||| Sbjct 2513134 TCCTCTACAAGGACGCTTGCAATGAAAAGTCCAACCAAAAGAACCTTGGCACTATTCAAT 2513075 Query 112383 AGTTCCAACCTCTGTACAGAAATCTTGGAATTTAC---AGACAAAGATGAGACGGCTGTG 112439 | ||||| |||||||| || || | | | || || | | || | || || Sbjct 2513074 -GCTCCAATCTCTGTACCGAGATTATCCAGTACACTTCAGCCGACGAAGTA---GCCGTT 2513019 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCC-AGA--GACAAAGAC---- 112492 || ||||| ||||| || ||||| || |||| ||| | | || | || | | Sbjct 2513018 TGCAACCTTGCATCGATTGCTCTACCAAAGTTTGTCAAGCGTAGTTCGCCATCGGCCGTC 2512959 Query 112493 -----ATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAAC 112547 |||||| || | | ||| |||| | || | | ||| ||||| ||| Sbjct 2512958 GCTTCATTTGACCATAACCATCTCGCCGAAATCACCCGTATCATTACACGTAACCTCAAC 2512899 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACAC 112607 | | ||||| | ||||| ||||| || || |||||| || || ||| | || Sbjct 2512898 AAGATCATTGACCGTAATTTCTACCCAGTCGAAGAAGCTCGTCGTTCCAACATGCGTCAT 2512839 Query 112608 CGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC- 112666 ||||||| || | || | |||||| | || || || || || | | || | || Sbjct 2512838 CGTCCAACCGGCATTGGAATTCAAGGTTTGGCCGACGTCTTTAT-CGCTCTCCGTATGCC 2512780 Query 112667 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTT--GAGACAATGTATCAC 112724 |||||| || | || | |||| | | | ||| || || || || | Sbjct 2512779 ATTTGACTCACCAGCTGCCGCCGTCCTCAA--CAAGGAGATTGCCGAAACCATCTACTAT 2512722 Query 112725 GCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 112784 || | ||||| || | | ||||| ||| || |||||||| || ||||||| Sbjct 2512721 GCTTCCCTTGACGCATCGTGTCAATTGGCCGAGCGCGACGGTCCATACGAGACCTTTGCA 2512662 Query 112785 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTT 112844 ||||| || ||||| ||||| | || |||||||| |||||||| | | |||| || Sbjct 2512661 GGTTCGCCCGCTTCCCAAGGTATCCTACAATTTGACATGTGGGATGTCCA-ACCAT-CTG 2512604 Query 112845 CAC--TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTC 112902 | | | ||||||| ||||||||| |||| ||| | | ||||| |||||| || Sbjct 2512603 CCCGTTGGGACTGGGCCGCTCTCAAACAACGTATCGTCAAACACGGTCTACGTAAC--TC 2512546 Query 112903 TTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATG 112960 || | | ||||| ||||||||||| |||||| |||| || | || || ||||| || Sbjct 2512545 GTTGCTCGTCGCACCCATGCCAACAGCATCCACCTCACAGATTCTCGGCAACAATGAGTG 2512486 Query 112961 CTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGAT 113020 |||||||| ||||| | ||||| || | | | | | || || |||||| | Sbjct 2512485 TTTTGAACCATACACTAGCAACATTTACTCGCGCAAGGTCTTGGCCGGCGAGTTTACCGT 2512426 Query 113021 TGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAA 113080 ||||||||||| | | | || |||| | ||||| | ||| | || ||||| Sbjct 2512425 CGTCAACAAGCAATTGCTCCAGGATCTCATGGCACTTGGTTTGTGGACTCCCGAAATGAA 2512366 Query 113081 GGATC---TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGA 113137 | | | |||| | || |||| || | ||||| | | ||| || || || Sbjct 2512365 GAACCAAATCATTGCTAA---CCGTGGGTCGGTACAAAACGTCCAAGGTATCCCCGACGA 2512309 Query 113138 AATTAAGAAGTTGTACCGCACAGTTTGGGAAA----TCAAGATGAAGGATGTCATTGACA 113193 | || || ||||| | | |||||| | |||| | | ||||||| | Sbjct 2512308 CCTCAAAGAGCTGTACAAGTCGGCTTGGGAGATTCGTCAACGTACA----CTCATTGATA 2512253 Query 113194 TGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAA 113253 |||| || || | ||| ||| || || |||||||| | || | || || | Sbjct 2512252 TGGCTGCCGACAGAGGTGCCTTTATCGACCAAAGTCAGTCGTTCAACGTGTTTATTGCCG 2512193 Query 113254 GTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAA 113313 |||| | |||| ||| | |||||||| | ||| ||||||||||||||||| | Sbjct 2512192 AACCAAACTTTGCCAAACTCACCTCTATGCATTTCTACGCCTGGAAGAAGGGTCTCAAGA 2512133 Query 113314 CGGGGATGTATTACCTCCG 113332 | || ||||| |||||||| Sbjct 2512132 CTGGTATGTACTACCTCCG 2512114 >seq5 Length=4166812 Score = 129 bits (142), Expect = 7e-25 Identities = 185/260 (71%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 102060 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGT 102119 |||||||| || | ||| || ||| | ||| | || || |||| |||||||| Sbjct 871584 TATATTAAAAATCCAGATGAAAAAAAGGTATTATTTAATGCAATTGAAACTATTCCATGT 871643 Query 102120 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 102179 | | || ||||| || |||||| ||| ||| || || || || || ||||| Sbjct 871644 GTAAAGAAAAAAGCTGACTGGGCTTTGAGATGGATT---ACCAACTCCAAGTCGTTTGCC 871700 Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 || || | | || ||||| ||||| |||||||| ||| |||| ||||| | Sbjct 871701 GAACGTTTGGTAGCTTTTGCCGCCGTTGAAGGTATCTTTTTCAGTGGTAGTTTCTGTTCG 871760 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || | ||||||||||||||| |||||||||||||||||| ||| ||||||||| | ||| Sbjct 871761 ATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGTCTCACCTTTTCCAACGAGTTGATC 871820 Query 102300 TCTCGTGACGAGGGACTCCA 102319 ||||||||| || ||||| Sbjct 871821 AGTCGTGACGAAGGTCTCCA 871840 >seq9 Length=911335 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 176887 AGAGGCATCACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCG 176946 |||| | ||||||||||| | || |||||||| ||||| ||||| |||||||| | Sbjct 389183 AGAGACTTCACGAACATTGATGACTTTACCACGAAGTGGGAATACACCATAGTGATCCCA 389242 Query 176947 ACCAACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGAT 177006 ||||||||| || | ||| || || | || || ||||| ||||| ||||| | || Sbjct 389243 ACCAACCACTGAAATACCAGCCGTTGCCAATGTCTTGGCAGAGTCACCTTCTGTTAAAAT 389302 Query 177007 GAGTGTACA 177015 ||||||||| Sbjct 389303 GAGTGTACA 389311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742206018000