Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-28 seq13 118 1e-21 seq5 84.2 3e-11 >seq3 Length=2750715 Score = 140 bits (154), Expect = 4e-28 Identities = 310/454 (68%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || |||||||| || |||||||| |||||| ||||| | |||||| || | | Sbjct 2512114 CGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAGGTG 2512173 Query 109468 AGTTTGG-AAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 ||||||| ||||| | | | | ||||||| ||| | ||||||| || ||||| || Sbjct 2512174 AGTTTGGCAAAGTTTGGTTCGG-CAATAAACACGTTGAACGACTGACTTTGGTCGATAAA 2512232 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGA-TACACTTTTGGCTAATTTCCCAGACAGTCT 109585 ||| | || || ||||| || |||| | || || | | ||| ||||| | | || Sbjct 2512233 GGCACCTCTGTCGGCAGCCATATCAATGAGTGTACGTT-GACGAATCTCCCAAGCCGACT 2512291 Query 109586 TGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCT 109645 |||||| | |||| || ||||| || | || |||||| | || |||| | Sbjct 2512292 TGTACAGCTCTTTGAGGTCGTCGGGGATACCTTGGACGTTTTGTACCGACCCACGG---T 2512348 Query 109646 TCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAA 109702 | | |||| | | |||||| || | ||| | ||| | ||||||| | | Sbjct 2512349 TAGCAATGATTTGGTTCTTCATTTCGGGAGTCCACAAACCAAGTGCCATGAGATCCTGGA 2512408 Query 109703 CAAGATGCTTGTTGACCACGACAAATTCACCAGC-AAGTG--TGCGTCGGAGGTAGATGT 109759 | ||||||||||| ||| ||| || || || ||| |||| ||| || |||| Sbjct 2512409 GCAATTGCTTGTTGACGACGGTAAACTCGCCGGCCAAGACCTTGCGC--GAG-TAAATGT 2512465 Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819 | | ||||| ||||| ||||||||||||||||| || || |||| ||||| ||||| | Sbjct 2512466 TGCTAGTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTGAGGTGGATGCTGTTG 2512525 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||||||| || | ||| | ||| || ||||| Sbjct 2512526 GCATGGGTGCGACGAGCAACGAGTTACGTAGACC 2512559 >seq13 Length=1327167 Score = 118 bits (130), Expect = 1e-21 Identities = 329/501 (66%), Gaps = 13/501 (3%) Strand=Plus/Plus Query 11501 TACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAG 11560 |||||||||||||||| || || | | ||| || |||| ||| |||||| ||| Sbjct 542722 TACGATCGAAACGACCGGGACGCATCAAGGCAGGGTCGAGAACGTCGGGACGGTTAGTAC 542781 Query 11561 CGGCAATGACTACAATGCCAGTCTCATTGTCG---AAACCGTCCATTTCTGTGAGAAGCT 11617 |||| || ||| | | || |||| || | || || ||||| || ||| || | Sbjct 542782 CGGC---GAATACGACGACACCCTCAGTGCTGCCAAATCCATCCATCTCGACGAGCAGTT 542838 Query 11618 GGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTAC 11677 | |||| || | |||||| || |||||| | | ||| | |||||| || Sbjct 542839 GATTGAGGGTGTTTTCACGTTCGTCGTTGTGGAAC---CCATTTCTCGAACGTGAACGAC 542895 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | ||||| ||||| |||||||| || | ||| || ||| |||||||||||||| || | Sbjct 542896 CCACAGCATCAATTTCATCGATAAAGATGATGCATGGTGTGTTGGCACGTGCCTCTTTAA 542955 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || || | ||||||| | ||| ||||| || |||||||| | |||| | | | Sbjct 542956 AGAGGTCTCTTACACGCGAAGGTCCTACACCCACAAACATCTCGATAAAGTCGGATCCCG 543015 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 | || ||| || || ||| || || | || || | | ||||| | Sbjct 543016 AGATGGTAAAGAATGGCACGCCGCTCTCGCCGGCCGTAGCCTTGGCCAACAACGTCTTGC 543075 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAA 11915 |||| ||||| | ||| | || | || || ||||||||||||||| |||| Sbjct 543076 CCGTGCCAGGGGGACCCACCAGGATCGCACCCTTGGGGATCTTGGCACCGAGCTTC--TT 543133 Query 11916 GTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTC 11975 ||| || | |||||||||||| ||||| |||| || ||||| ||||| || Sbjct 543134 GTACTTGTCGGCGTTCTTGAGGAAGCTCACAAACTCCATAATCTCCTCTTTGGCCTCATC 543193 Query 11976 GATACCCTCAACATCGGTGAA 11996 ||||| | ||||| |||| Sbjct 543194 CATACCGGCCACATCCTTGAA 543214 >seq5 Length=4166812 Score = 84.2 bits (92), Expect = 3e-11 Identities = 186/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||| || ||||| || ||| ||| | ||| || ||| || || Sbjct 871853 GGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGACC 871794 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | ||||| ||||||||||| | ||| ||||| ||| || ||||| Sbjct 871793 TGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGAT 871734 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCA 119674 || || || ||| ||||| | | ||| || ||||| | || ||| | ||| Sbjct 871733 ACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGTAATCCA 871674 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 | | |||||||| || || || || || || | ||||| || || | || | Sbjct 871673 TCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTAAATAA 871614 Query 119735 TTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAAT 119773 | ||| |||||| | || ||||||||| ||||||| Sbjct 871613 TACCTTTTTTTCATCTGGATTTTTAATATATGTATCAAT 871575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975815945000