Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 233 2e-56 seq1 87.8 2e-12 seq5 86.0 7e-12 seq16 82.4 9e-11 >seq3 Length=2750715 Score = 233 bits (258), Expect = 2e-56 Identities = 1148/1798 (64%), Gaps = 62/1798 (3%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| || |||||||| || | ||||| ||||| | ||||||||| | | Sbjct 2512114 CGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAGGTG 2512173 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 || |||| | |||| | || || | || | ||||| ||||| || ||| Sbjct 2512174 AGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATAAAG 2512233 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA----TTTCCCACACTGT 105765 ||| | | || ||||||||||||| | | |||| | ||||| | | Sbjct 2512234 GCACCTCTGTCGGCAGCCATATCAATGAG----TGTACGTTGACGAATCTCCCAAGCCGA 2512289 Query 105766 GCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGC 105825 ||| || | |||| || || |||||| || || ||||| | || ||| || Sbjct 2512290 CTTGTACAGCTCTTTGAGGTCGTCGGGGATACCTTGGACGTTTTGTACCGA--CCCACGG 2512347 Query 105826 CTTGACCATGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATT 105882 | | | |||| | | |||||| || | ||| | ||||| | ||||||| | Sbjct 2512348 TTAG-CAATGATTTGGTTCTTCATTTCGGGAGTCCACAAACCAAGTGCCATGAGATCCTG 2512406 Query 105883 GACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTT 105942 || | ||||||||||| | |||||| || || | | | | | || ||||| Sbjct 2512407 GAGCAATTGCTTGTTGACGACGGTAAACTCGCCGGCCAAGACCTTGCGCGAGTAAATGTT 2512466 Query 105943 CGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 106002 | ||||| |||||||| || ||||| || || | || |||| |||||| |||||||| Sbjct 2512467 GCTAGTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTGAGGTGGATGCTGTTGG 2512526 Query 106003 CATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGA 106060 ||| ||||| | | || || |||||| ||||| | || ||| |||| |||||| Sbjct 2512527 CATGGGTGCGACGAGCAACGA--GTTACGTAGACCGTGTTTGACGATACGTTGTTTGAGA 2512584 Query 106061 ACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCC 106118 | ||||||| | | || ||||| | | |||||||| |||||||| || | | Sbjct 2512585 GCGGCCCAGTCCCAACGGGCAG-ATGGTTGGA-CATCCCACATGTCAAATTGTAGGATAC 2512642 Query 106119 CTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCAC 106178 ||||||| | ||| ||||| |||| ||||| || | ||| | | || ||||||| || Sbjct 2512643 CTTGGGAAGCGGGCGAACCTGCAAAGGTCTCGTATGGACCGTCGCGCTCGGCCAATTGAC 2512702 Query 106179 AGCTCGCCTCCAGGGATGCGTGATACATGGTTTC--AAAGATACGAGCATTCATCTCCTT 106236 | || || ||||| || | || |||||||| || | | | || | | Sbjct 2512703 ACGATGCGTCAAGGGAAGCATAGTAGATGGTTTCGGCAATCTCCTTG--TTGAGGACGGC 2512760 Query 106237 GGCTTCATCTGAATCAAAT-GCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAA 106295 ||| | ||| |||||| || || ||| ||||| || || || | |||||||| Sbjct 2512761 GGCAGCTGGTGAGTCAAATGGCATA-CGGAGAGCGATAAAGACGTCGGCCAAACCTTGAA 2512819 Query 106296 CACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAA 106355 || | || | || | || ||||| || || || || || || || || | Sbjct 2512820 TTCCAATGCCGGTTGGACGATGACGCATGTTGGAACGACGAGCTTCTTCGACTGGGTAGA 2512879 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTT 106415 |||| | |||||||| ||| || || |||| || |||||||| || | Sbjct 2512880 AATTACGGTCAATGATCTTGTTGAGGTTACGTGTAATGATACGGGTGATTTCGGCGAGAT 2512939 Query 106416 TTTCATAATCAAAAG-TGCGA-GTC---------TCTTC-ATTGACATACTTTGGAAGGG 106463 | || ||||| | |||| | | || | |||||| ||||||| || | Sbjct 2512940 GGTTATGGTCAAATGAAGCGACGGCCGATGGCGAACTACGCTTGACAAACTTTGGTAGAG 2512999 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTC 106521 | || ||||| | |||||||| || || || || | ||||||| | ||| || Sbjct 2513000 CAATCGATGCAAGGTTGCAAACGGCTACTTCGTCGGCTGA--AGTGTACTGGATAATCTC 2513057 Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 ||||| | ||||| | | ||| || || | ||||||||||| ||||| ||||| Sbjct 2513058 GGTACAGAGATTGGAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCA 2513117 Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTT 106641 || ||||||||||| ||||| || || || ||||| | || || | || || || Sbjct 2513118 AGCGTCCTTGTAGAGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAA 2513177 Query 106642 CCACACATC-GGCGGCTGGTACA-ATGGCGTTGGCCCGTCC----CTCCGCCTCGTACTT 106695 ||| | || | | || | || | || ||| ||| || | |||||| Sbjct 2513178 CCAGAGGTCTTGTGCCTTGACCACCTTACG--GGCTAATCCAGGAGTCTG-CTCGTAGGA 2513234 Query 106696 TGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGG 106755 |||||| | |||| || || |||| | || || || | || ||| Sbjct 2513235 AAGGTAGAGATCGCGGAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGG 2513294 Query 106756 ACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 106815 ||| || | ||||| | || || || || || | ||| || || || | | ||| Sbjct 2513295 ACAAAACAACGACCACTCGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATACCCA 2513354 Query 106816 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 106875 || | ||||||| || | || |||||| | ||| ||||| | | || Sbjct 2513355 GAGTGCGTAAAAGAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGTC 2513414 Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTC- 106934 || ||||| | || |||| ||||||||| || || ||||| || | | ||||||| Sbjct 2513415 GAGAAACTCGAAAATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTCT 2513474 Query 106935 --GACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 106992 | ||| |||| | ||||| || || || ||||||| || || |||||||| | Sbjct 2513475 CTTGCCTCCACCTTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCAC 2513534 Query 106993 AATACCATCTGATTG-ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCAT 107051 | ||| | || | | ||| || || || || ||| ||| ||| | | | | Sbjct 2513535 CAAACCGT-TGCTAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTTGT 2513593 Query 107052 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 107111 | | | || |||||||| || || | ||| || || | ||||| | | | || || Sbjct 2513594 GCACGGCGATACCAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGT 2513653 Query 107112 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 107171 |||| ||||| | ||| ||||| ||||| | | ||||| ||||| ||||| || | Sbjct 2513654 CATAAATACCTTCGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTTGAG 2513713 Query 107172 --GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGA 107229 | |||||| ||||| || ||||||||||| || || || | || || | || Sbjct 2513714 GCGAGTTGGTG--CCAGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTTGA 2513771 Query 107230 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCAC 107289 || | |||||| || || | | ||| |||||||| || |||||||| || | | || Sbjct 2513772 CAATTGGTCGTACGTGTCAATGGCAGCGTCAATGTCGTCACCGTGGATACCAAGTGAGAC 2513831 Query 107290 ACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAG 107347 |||||| |||| || |||||| ||| |||| || ||| || || || | |||| Sbjct 2513832 ACGCATCAACAAGTGTTGGGGACGTTCGATGATCATATCATTGACACGGTGCAAATAG 2513889 >seq1 Length=2485436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 169152 GGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCG 169211 |||||||| ||||| || | ||| | |||||||||||||| || |||||||||||||| Sbjct 2083950 GGCCAGAAATAGTGAATAAAATTAATAATGAGACCCTTGATATGTGAACCATCATTATCT 2084009 Query 169212 GCATCTGTCATAATCATAAGACGACCATAGCGAAGTTC 169249 ||| ||||||||||||| ||||| ||||| || Sbjct 2084010 TGATCAGTCATAATCATAATCTTTCCATAACGAAGGTC 2084047 >seq5 Length=4166812 Score = 86.0 bits (94), Expect = 7e-12 Identities = 191/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||||| || || || || | || || || ||| || || Sbjct 871853 GGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGACC 871794 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||||||||| |||||||| | |||| | || | ||||| || ||| ||||| Sbjct 871793 TGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGAT 871734 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA 117452 ||| || || ||||| || | | || ||||| || || || || || || Sbjct 871733 ACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAGTTGGT---AAT 871677 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 |||| ||| ||||| | || || |||| | |||||| | ||||| || || | ||| Sbjct 871676 CCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTAAA 871617 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAAT 117558 ||| ||| |||||| | || ||||| ||| | ||||| ||| Sbjct 871616 TAATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAAT 871571 >seq16 Length=3468650 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 25687 ATCAAAATAATTCGCTGTAATAATGTTTATGGTCCAAATCAATACCCGGAGAAACTCATT 25746 |||| || | ||| ||||||||||| |||||||||||||||| ||| |||||| | ||| Sbjct 1784449 ATCATCATTACTCGTTGTAATAATGTCTATGGTCCAAATCAATTCCCAGAGAAATTAATT 1784508 Query 25747 CCAAAGTTTATAA 25759 ||||| ||||||| Sbjct 1784509 CCAAAATTTATAA 1784521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980615631000