Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 165 9e-36 seq4 109 6e-19 >seq5 Length=4166812 Score = 165 bits (182), Expect = 9e-36 Identities = 235/322 (73%), Gaps = 9/322 (3%) Strand=Plus/Minus Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 |||| |||||||||||||| || || || ||||| || || |||||||||||||| | || Sbjct 871473 TTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCTTCAGGTA 871414 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAA-TTTTCATTAACTATTCCATCACTAGCT 19377 | || |||||| ||| | ||| ||| ||||| || || || |||||| || Sbjct 871413 TTTGAACTTCAG-ACATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATCAGAGGCA 871355 Query 19378 GCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT-AATGTATTC-- 19434 || ||||| || ||||||| || ||||| || ||||| || || ||| ||||| Sbjct 871354 GCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCAT-TGTCATTCAATTTATTCTC 871296 Query 19435 -CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 || || || | ||| | | ||||| | ||||| |||||||||| |||||||| Sbjct 871295 CCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGCCTCTGC 871236 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTT 19553 ||||||||||| ||||| ||||| ||||| || || |||| ||||||||||| || Sbjct 871235 CTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCTATCCTT 871176 Query 19554 ATTTTC-TTTAAGAATAGGTTC 19574 || || ||||| ||| ||||| Sbjct 871175 GTTCTCTTTTAATAAT-GGTTC 871155 Score = 125 bits (138), Expect = 8e-24 Identities = 208/297 (70%), Gaps = 9/297 (3%) Strand=Plus/Minus Query 18960 ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAA 19019 ||| ||||| || ||||| || || ||||| | ||| ||||| || || ||||| || | Sbjct 871856 ACAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAG 871797 Query 19020 ACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAA 19079 ||| ||||| || || | || || | ||| || || ||| || ||| || || Sbjct 871796 ACCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAA 871737 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA--ACTAGCATCATTATTA 19137 |||||||| || || |||||||| || | | ||| || | ||| | | || Sbjct 871736 GATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGAG-----TTG 871682 Query 19138 TGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAA 19197 ||||||| ||| ||||| ||||| || || ||||||||||| || || || || | | Sbjct 871681 GTAATCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCA 871622 Query 19198 TTAAATAGATA-CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 ||||||| ||| | | ||||||| || ||||| ||||| ||| || |||||||| Sbjct 871621 TTAAATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACT 871566 >seq4 Length=1429294 Score = 109 bits (120), Expect = 6e-19 Identities = 185/268 (69%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 65881 TTTCAAGATATTGTAGAGTTTTGTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTT 65940 ||||||||||| || ||| ||||| || | || ||| ||| || | || || ||| Sbjct 1379627 TTTCAAGATATAGTTCCATTTAGTGAAGATCTTGCTAATCGAGGCAAGACTGTCATTGTT 1379686 Query 65941 GCAGCATTGGATGGAACATTTAAAAGAAAACCTTTTGGTAATGTATTAAATTTAATTCCA 66000 |||||| | ||||| ||||| |||||||||| ||||| | |||| | | || | ||| Sbjct 1379687 GCAGCACTTGATGGTACATTCCAAAGAAAACCCTTTGGGACTGTACTCGAGTTGGTCCCA 1379746 Query 66001 TTATCTGAAACAGTAACAAAACTTACAGCTGTGTGTATGAAATGTTTTAAAGATGCATCT 66060 | || | | ||||| |||||||| || || ||| |||| || ||||||||| | Sbjct 1379747 AAGGCAGAGAGCATTACAAAGCTTACAGCGGTTTGCATGCAATGCTTCAAAGATGCACCA 1379806 Query 66061 TTTTCAAAACGTATAGGTACAGAAACAGAGATAGAAATTATAGGCGGTAAAGATAAATAT 66120 || | ||| | || | | | || | | | ||| | || || || ||||||||| Sbjct 1379807 TTCACCAAAAGAATCGTTCCTGATGAAACGGTTGAACTCATTGGAGGAGCCGATAAATAT 1379866 Query 66121 CTATCTGTATGTAGGAAGTGTTATAATG 66148 |||| || ||||| | |||||| ||| Sbjct 1379867 ATATCAGTTTGTAGAGAATGTTATCATG 1379894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108624341000