Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq24 205 7e-47 seq3 183 2e-40 seq21 125 6e-23 >seq24 Length=3408800 Score = 205 bits (226), Expect = 7e-47 Identities = 359/514 (70%), Gaps = 9/514 (2%) Strand=Plus/Minus Query 550020 ATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTA 550079 ||| || | | || ||||||||||||| || ||||||||| ||||||||||||||||||| Sbjct 1498085 ATAATTTTTTAGGAGTTTGGCAAAATGATAGAGTTGAAATCATTGCCAATGATCAAGGTA 1498026 Query 550080 ACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAG 550139 | |||||||| ||||| ||||| | ||||| || || |||| ||| |||| ||||| | Sbjct 1498025 ATAGAACTACACCATCATATGTAGCATTCACTGATACAGAACGTTTGATTGGAGATGCCG 1497966 Query 550140 CAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTG 550199 | || |||||| || || || || || | |||||||| || ||| | || | Sbjct 1497965 CCAAGAATCAAGTGGCTATGAACCCACAAAACACAGTGTTTGATGCCAAGCGTCTCATCG 1497906 Query 550200 GAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTG 550259 | |||| |||| ||| || ||| ||||| ||||||||||||||||| ||| | |||| Sbjct 1497905 GTAGAAAGTTTAGTGACCCGGTTGTCCAGGCCGATATGAAGCATTGGCCATTCAAGATTG 1497846 Query 550260 TT---AATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACA-A 550315 || || | || || || ||||||| | | |||| | ||| | Sbjct 1497845 TTCAAAAGGAAGGTGACAAGCCAGTCATTGAAGTTGAATA-CAAGGGCGAGAAAAAGACG 1497787 Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGC 550374 ||| |||||||| | || || || ||||| || | || |||||| | || ||| ||| | Sbjct 1497786 TTTACACCAGAAGAGATCTCGTCCATGGTGTTGCTCAAGATGAAAGAGACTGCCGAGT-C 1497728 Query 550375 TTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 || | || |||| | | | || || || || || ||||| ||||| || |||| Sbjct 1497727 GTTCCTCGG-AAAGACCATCAACAACGCCGTTATCACCGTGCCAGCCTATTTCAACGACT 1497669 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 | |||||||| ||||| || ||||| || ||||| | || || | ||||| | Sbjct 1497668 CTCAACGTCAGGCTACCAAGGATGCCGGTGTCATTGCCAAGTTGAACGTACAACGTATCA 1497609 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || || ||||| || || |||| ||||| Sbjct 1497608 TCAACGAGCCAACTGCCGCCGCCATTGCCTATGG 1497575 >seq3 Length=2750715 Score = 183 bits (202), Expect = 2e-40 Identities = 386/565 (68%), Gaps = 13/565 (2%) Strand=Plus/Minus Query 549980 TCAAACAAAGT-AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTG 550038 ||||| || || |||||| || || |||||||| || ||||| || |||||||| || Sbjct 2431646 TCAAA-AATGTCAGCTATTGGAATTGATTTAGGTACTACATACTCATGCGTTGGTGTATG 2431588 Query 550039 GCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTA 550098 |||||| | | |||||||| |||||||| || |||||||||||||| || ||||| || Sbjct 2431587 GCAAAACGATCGTGTTGAAATCATTGCCAACGACCAAGGTAACAGAACCACCCCATCATA 2431528 Query 550099 TGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGG 550158 |||| | || | || |||||| ||| |||||||||| || || | |||| | | Sbjct 2431527 TGTTGCCTTTAACGACTCTGAACGTTTGATTGGTGATGCCGCCAAGAACCAAGTCGCCAT 2431468 Query 550159 TAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAG-AAGTTTTAATGATT 550217 || || ||||| || ||||| ||||| || ||| | ||||| | ||||| | ||| Sbjct 2431467 GAACCCAACCAACACCATTTTCGATGCCAAGCGTCTCATTGGTCGTAAGTTCT-CTGACG 2431409 Query 550218 CGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGT---TAATGTTTCTGGAA 550274 | || || | || |||||||| ||||| ||| | |||| || | || | Sbjct 2431408 CCGTCGTCCAATCCGACATGAAGCACTGGCCATTCAAGGTTGTCCAAAAGGAAGGTGACA 2431349 Query 550275 AACCTTATATTGAAGCT--ACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAAT 550332 | || || | ||| | | ||| | || ||||| || || |||||| || | Sbjct 2431348 AGCCATACCTCCAAGTTGAATTCA--AGGGTGACGTTAAGACCTTCTCCCCAGAAGAAGT 2431291 Query 550333 TTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AG 550391 ||||| |||||| | | || ||||| |||| ||| || | | ||| |||| | Sbjct 2431290 CTCATCCATGGTTCTCCTCAAGATGAAGGAAACTGCCGAAGCCTACCTCGGT-AAGACCG 2431232 Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 | | | || || || || || ||||| ||||| || ||||| ||||||||||| || | Sbjct 2431231 TCAACAACGCTGTCATCACCGTTCCAGCTTATTTCAACGACTCTCAACGTCAAGCCACCA 2431172 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | || ||||| ||||| || || |||| ||||| ||||| || || || || | Sbjct 2431171 AGGACGCTGGTGTCATTGCCAAGCTCAACGTTCAACGTATCATCAACGAGCCAACCGCCG 2431112 Query 550512 CTGCACTTGCATATGGACTTGATAA 550536 | || | || || || || || || Sbjct 2431111 CCGCCATCGCCTACGGTCTCGAAAA 2431087 >seq21 Length=1919465 Score = 125 bits (138), Expect = 6e-23 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || ||||| || || ||| || ||| || || || | | |||||| Sbjct 1352598 GAGACGAAGGACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCGGACAAAGTTCT 1352539 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 | ||||| | |||||| ||||||||||| || | ||| |||||||| ||||| ||||| Sbjct 1352538 TCCGTCTTCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTC 1352479 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAG 563434 || |||||||| || ||||| ||||| ||||| | | | || ||| | || Sbjct 1352478 CTTGTCTTGAATCTTGGCCTTTACGTTTTCAATGGTATC-GGATCCTTCCACTTCCAAAG 1352420 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | |||||||||||| || || || ||||||||||||||| Sbjct 1352419 TGATAGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCATA 1352379 Score = 113 bits (124), Expect = 4e-19 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| |||||||| || || ||| || ||| |||||||| | | |||||| Sbjct 1444423 GAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCT 1444364 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| | |||||| ||||||||||| || | ||| |||||||| ||||| ||||| Sbjct 1444363 GCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTC 1444304 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG---TGTGAGTACATTCGAG 563432 || ||||| || || || || ||||| || |||| | | || | | || Sbjct 1444303 CTTGTCTTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGAACCTTCA--ACCTCCAAG 1444246 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || |||||||| | |||||| || ||||||||||| Sbjct 1444245 -GTAATGGTCTTACCAGTTAAAGTTTTTACAAAAATTTGCAT 1444205 Score = 113 bits (124), Expect = 4e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 |||||| || || ||||| || || ||| || ||| |||||||| | | |||||| Sbjct 1445107 GAGACGAAGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCT 1445048 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| | |||||| ||||||||||| || | ||| |||||||| ||||| ||||| Sbjct 1445047 GCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTC 1444988 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGT 563435 || |||||||| || || || |||||| || |||| | ||| ||||| Sbjct 1444987 CTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGATCCCTCAACTTCAAGAGT 1444928 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || |||||||| || || || || || ||||||||| Sbjct 1444927 GATGGTCTTACCAGTGAGGGTCTTTACAAAGATTTGCATA 1444888 Score = 104 bits (114), Expect = 2e-16 Identities = 159/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || | |||||||| ||| |||| ||| || || || | || ||| Sbjct 1352142 GAGACGGAGGACCAAGTGAAGGGTTGACTCCTTTTG--AATGTTATAGTCGGATAAAGTG 1352085 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||| | ||| ||||| ||||| ||||| | ||| |||||||| || || ||| Sbjct 1352084 CGACCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCT 1352025 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 || || |||||||| || ||||| ||||| ||||||| | || | | || Sbjct 1352024 TCCTTGTCTTGAATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAACCTCCAAG 1351965 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || ||||||||||||||||| || ||||||||||| Sbjct 1351964 -GTGATGGTCTTACCAGTAAGAGTTTTTACAAAAATTTGCAT 1351924 Score = 95.1 bits (104), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| |||||||| || || ||| || ||| |||||||| | | |||||| Sbjct 1444651 GAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCT 1444592 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||||| || || || || ||||| ||||| | ||| |||||||| ||||||||||| Sbjct 1444591 GCCGTCTTCGAGCTGCTTGCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCTTC 1444532 Query 563376 TTTATCTTGAATTTT 563390 || ||||| || || Sbjct 1444531 CTTGTCTTGGATCTT 1444517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294677887250