Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq21 149 5e-31 seq24 138 9e-28 seq2 138 9e-28 >seq21 Length=1919465 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 || || || | ||| | ||| || | ||| || || ||||| ||||| || || || ||| Sbjct 1352837 TTACCACCACGTAATCTTAATACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCG 1352778 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | | |||||| | || || |||||||| || ||||| || | ||| |||||||| || Sbjct 1352777 GACAAAGTTCTTCCGTCTTCTAATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGT 1352718 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 ||||| ||||| || |||||||| || || ||| | || | |||||| || ||| Sbjct 1352717 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACATTCTCGATAGTGTCGGATCCTTCA 1352658 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||||| || || |||||||| || |||||||| || ||||| Sbjct 1352657 ACTTCAAGAGTGATGGTCTTACCGGTTAATGTCTTTACAAAGATTTGCAT 1352608 Score = 145 bits (160), Expect = 6e-30 Identities = 157/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| ||||| || |||||||| | | ||||||| | || |||||||| Sbjct 1444408 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTG 1444349 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| ||||| || | ||| |||||||| || ||||| ||||| || ||||| || || Sbjct 1444348 TTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTT 1444289 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | ||||||||| ||| || || | || | || || || || Sbjct 1444288 GGTCTTGACATTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTACCAGT 1444229 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||||||||||||| || |||||| || Sbjct 1444228 TAAAGTTTTTACAAAAATTTGCATGATT 1444201 Score = 138 bits (152), Expect = 9e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| ||||| || |||||||| | | ||||||| | || |||||||| Sbjct 1445092 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTG 1445033 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| ||||| || | ||| |||||||| || ||||| ||||| || |||||||| || Sbjct 1445032 TTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTT 1444973 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | |||||||| || ||||||||||||| || || || || Sbjct 1444972 GGTCTTGACATTCTCAATGGTGTCAGATCCCTCAACTTCAAGAGTGATGGTCTTACCAGT 1444913 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || |||||||| || ||||| Sbjct 1444912 GAGGGTCTTTACAAAGATTTGCAT 1444889 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| ||||| || |||||||| | | ||||||| | || || | || Sbjct 1444636 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCGAGCTG 1444577 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | ||| |||||||| || ||||| ||||| || ||||| || || Sbjct 1444576 CTTGCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATTCCTTCCTTGTCTTGGATCTT 1444517 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||||||| || ||||||||||||| || |||||||| Sbjct 1444516 GGTCTTGACATTCTCGATAGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTGCCGGT 1444457 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| || ||||| Sbjct 1444456 CAATGTCTTGACAAAGATTTGCAT 1444433 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || ||||| || ||||| |||| | ||||||| | || || | || Sbjct 1445320 ATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCGAGCTG 1445261 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| || | ||| |||||||| || ||||| ||||| || ||||| || || Sbjct 1445260 CTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTT 1445201 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| |||| | |||||||| || ||||||||||||| || || || || Sbjct 1445200 GGTTTTGACATTTTCAATGGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTACCAGT 1445141 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||| || |||||||| || ||||| Sbjct 1445140 TAATGTCTTTACAAAGATTTGCAT 1445117 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || |||||||| || || ||||| || || || |||| | ||| | | || || Sbjct 1352132 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 1352073 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| || | ||| |||||||| || || || ||||| || |||||| Sbjct 1352072 AATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGA 1352013 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| |||| | || ||||| ||| || || | |||| || || Sbjct 1352012 ATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAACCTCCAAGGTGATGGTCTTA 1351953 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || | |||||||||||| || |||||| || Sbjct 1351952 CCAGTAAGAGTTTTTACAAAAATTTGCATGTTT 1351920 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| ||||| || || ||||||| | ||| | | || || ||||| Sbjct 1352355 ATGGAGAGTTGATTCCTTTTGGATGTTATAATCGGAAAGAGTACGTCCGTCTTCTAATTG 1352296 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||||||||| || || | |||||||| || ||||| ||||| || ||||| || || Sbjct 1352295 TTTACCTGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTT 1352236 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | |||||| || ||| ||||| || |||| || ||||| || Sbjct 1352235 GGCCTTGACATTTTCGATAGTGTCGGATCCTTCGACTTCGAGGGTGATTGTCTTGCCAGT 1352176 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 1352175 GAGGGTCTTGACAAAGATTTGCAT 1352152 >seq24 Length=3408800 Score = 138 bits (152), Expect = 9e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| ||||| || |||||||| | || |||||| |||| || ||||| Sbjct 191977 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGAGAGGGTTCTGCCATCCTCTAATTG 192036 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||||| ||||| || | ||| |||||||| || || || ||||| || |||||||| || Sbjct 192037 TTTACCGGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTT 192096 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || |||| | ||||| || ||| ||||||||||||| || || || || Sbjct 192097 GGTCTTAACGTTTTCAATGGTGTCGGATCCTTCGACTTCAAGAGTGATGGTCTTACCAGT 192156 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| |||||||| Sbjct 192157 CAATGTCTTGACAAAGATCTGCAT 192180 Score = 114 bits (126), Expect = 1e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| ||||| || |||||||| | || ||||| |||| || ||||| Sbjct 192205 ATGGAGAGTGGATTCCTTTTGGATGTTGTAATCCGAGAGGGTTCTACCATCCTCTAATTG 192264 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT-TTATCTTGAATTT 101384 ||||| || || || | ||| |||||||| || || || ||||| || ||||| || | Sbjct 192265 TTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGGATACCTTCCCTTGTCTTGGATCT 192324 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | || ||| |||| | |||||||| || ||||||||||||| || || || | Sbjct 192325 TGGTCTTGACATTTTCAATGGTGTCAGATCCCTCGACTTCAAGAGTGATGGTCTTACCAG 192384 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | | || || ||||| || ||||| Sbjct 192385 TGAGGGTCTTGACAAAGATTTGCAT 192409 >seq2 Length=1770755 Score = 138 bits (152), Expect = 9e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | || | ||| | ||| ||||||||||| ||||| || |||||||| | | Sbjct 948823 CCACCTCTAAGGCGGAGAACGAGATGGAGGGTAGATTCCTTTTGGATGTTGTAATCCGAG 948882 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || || | ||||||||| ||||| || | ||| ||||||||||| || Sbjct 948883 AGGGTACGACCGTCTTCGAGTTGCTTACCGGCAAAGATAAGACGTTGTTGATCGGGTGGG 948942 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || || || |||| | || || || ||| ||| Sbjct 948943 ATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTATCTGAACCTTCAACT 949002 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 |||||||||| || || || |||||||| || || || ||||||||| || Sbjct 949003 TCAAGAGTGATGGTCTTTCCTGTTAAAGTCTTAACGAAGATCTGCATGTTT 949053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278279258925