Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq21 111 1e-19 seq24 87.8 1e-12 >seq21 Length=1919465 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || |||||||| |||||||| || | | ||| |||| ||||| || Sbjct 1444408 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTG 1444349 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||||||||| || || || |||||||| | |||| || |||||||| ||||| Sbjct 1444348 TTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGGATCTT 1444289 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | || || || | || ||||||| ||||| || || || || Sbjct 1444288 GGTCTTGACATTTTCAATAGTGTCAGAACCTTCAACCTCCAAGGTAATGGTCTTACCAGT 1444229 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||||||||| ||||| Sbjct 1444228 TAAAGTTTTTACAAAAATTTGCAT 1444205 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| |||||||| || || || |||| | | ||| |||| || Sbjct 1352132 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 1352073 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || ||||| || || || |||||||| | || | || |||||||| | Sbjct 1352072 AATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGA 1352013 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | || || | || ||||||| || || || || Sbjct 1352012 ATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAACCTCCAAGGTGATGGTCTTA 1351953 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||||||||||||| ||||| Sbjct 1351952 CCAGTAAGAGTTTTTACAAAAATTTGCAT 1351924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || |||||||| |||||||| || | | ||| |||| ||||| || Sbjct 1445092 ATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCGACAAAGTTCTGCCGTCTTCCAATTG 1445033 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||||||||||| || || || |||||||| | |||| || |||||||| |||||| Sbjct 1445032 TTTACCGGCAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTT 1444973 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || |||| || || | || || || || || || Sbjct 1444972 GGTCTTGACATTCTCAATGGTGTCAGATCCCTCAACTTCAAGAGTGATGGTCTTACCAGT 1444913 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || |||||||| || ||||| Sbjct 1444912 GAGGGTCTTTACAAAGATTTGCAT 1444889 >seq24 Length=3408800 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| || |||||||| || ||| |||| |||| || || || ||||||||||| Sbjct 192447 TCCTTTTGGATGTTGTAATCGGAAAGAGTTCGGCCGTCTTCTAATTGTTTACCGGCAAAG 192506 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | || | || |||||||| |||||| || ||| Sbjct 192507 ATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTT 192566 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || |||| || || || || || ||||| || || ||| Sbjct 192567 TCGATAGTGTCAGAACCTTCGACTTCCAAGGTGATGGTCTTGCCGGTCAATGTCTTGACA 192626 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 192627 AAGATTTGCAT 192637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937483933075