Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq21 122 7e-23 seq24 95.1 1e-14 >seq21 Length=1919465 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| |||||||| |||||||| ||||| ||||| || ||| ||| || Sbjct 1352608 ATGCAAATCTTTGTAAAGACATTAACCGGTAAGACCATCACTCTTGAAGTTGAAGGATCC 1352667 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || ||||| || || | || |||||| Sbjct 1352668 GACACTATCGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 1352727 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| || || ||||| ||||| | |||| || |||| |||||| Sbjct 1352728 CAACGTCTTATCTTTGCTGGAAAGCAATTAGAAGACGGAAGAACTTTGTCCGACTATAAC 1352787 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||| ||||| ||||| || | |||||||||||||| || || Sbjct 1352788 ATTCAAAAGGAATCAACTCTCCATCTCGTATTAAGATTACGTGGTGG 1352834 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||||||||| ||||| ||||| ||||||||| || ||| ||| Sbjct 1444205 ATGCAAATTTTTGTAAAAACTTTAACTGGTAAGACCATTACCTTGGAGGTTGAAGGTTCT 1444264 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| || || | || |||||| Sbjct 1444265 GACACTATTGAAAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1444324 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || || ||||| || |||||||||||||| | |||| || | ||||| ||| Sbjct 1444325 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGGATTACAAC 1444384 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 |||||||| ||||| ||||| || Sbjct 1444385 ATTCAAAAGGAATCCACTCTCCA 1444407 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || || ||||| || ||| || || Sbjct 1444433 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACTCTTGAAGTCGAGGGATCT 1444492 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || ||| ||||| || ||| | || |||||| Sbjct 1444493 GACACTATCGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 1444552 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| ||||| || | ||||| | |||| || | ||||| ||| Sbjct 1444553 CAACGTCTTATCTTTGCTGGCAAGCAGCTCGAAGACGGCAGAACTTTGTCGGATTACAAC 1444612 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 |||||||| ||||| ||||| || Sbjct 1444613 ATTCAAAAGGAATCCACTCTCCA 1444635 >seq24 Length=3408800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 || ||||||||| ||||| ||||||||||| ||||||||||||||| ||| ||| Sbjct 193097 AACAATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAAGG 193038 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | || ||||| || || ||||| || || | || || Sbjct 193037 CTCTGACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGA 192978 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | || || || || || |||||||| || ||| || ||| | | ||||| Sbjct 192977 TCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTA 192918 Query 28730 TAACATTCAAAAAGAATCTACTCTGCA 28756 ||||| ||||| ||||| ||||| || Sbjct 192917 CAACATCCAAAAGGAATCCACTCTCCA 192891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || ||||| || || || ||||| ||| ||| ||| ||| Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || ||||| || || | || |||||| Sbjct 192577 GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAA 192518 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | || |||||||| || |||||||| ||||| |||| | ||||||| ||| Sbjct 192517 CAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTACAAC 192458 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||| ||||||||||| || Sbjct 192457 ATCCAAAAGGAATCTACTCTCCA 192435 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || ||||| ||||| ||| |||| ||| || Sbjct 192865 ATGCAAATTTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGATCC 192806 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| || || ||||| || || | || |||||| Sbjct 192805 GACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAA 192746 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | ||||||||||| || |||||||| ||||| | |||| || | || || ||| Sbjct 192745 CAACGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTTTGTCGGACTACAAC 192686 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 || ||||| ||||| ||||| || Sbjct 192685 ATCCAAAAGGAATCCACTCTCCA 192663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404670384475