Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1 242 5e-59 seq21 105 9e-18 >seq1 Length=2485436 Score = 242 bits (268), Expect = 5e-59 Identities = 420/599 (70%), Gaps = 16/599 (3%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || ||||||||||| ||||| | | || |||||||| | ||| |||||||| ||||| Sbjct 1667540 CCAGTGGCAATAACGAAATCTTGTGCTTGGTCTTGTTGCAACATCAACCACATTGCCTCT 1667599 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 ||||| ||||| ||||| ||||| || | ||||| | ||| || ||||| || | Sbjct 1667600 ACATAGTCTCTTGCATGACCCCAATCTCTCTTTGCATTCAAATTGCCAAGATACAAGGTG 1667659 Query 47908 TCTTGCTTACCTTCAGAGAT---TGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 || | | ||| | || ||| || | ||||||||| ||||| ||||| Sbjct 1667660 TCGTTTTGACCGGCCTTTATACGTGCCACAAAC---CGTGTAATCTTTCGAGTGACAAAT 1667716 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 || ||| | | ||||| || || || || |||||||| | || ||| | || ||| Sbjct 1667717 GTCATACCTCTACGAGGAGACTCGTGGTTGAACAGAATACCGTTGCACGCAAAGATACCG 1667776 Query 48025 TATGATTCACGATAGTTCTTTAC-TATCCAGTACCCATAGAGTTTTGCAACACCATAAGG 48083 |||| ||||||||||| | || | ||||||| || | |||| || || | || || Sbjct 1667777 TATGCCTCACGATAGTT-TACACATGTCCAGTATGCAAATTGTTTGGCCACTGCGTATGG 1667835 Query 48084 AGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCT--CTTGCACCTTACCATAA 48141 || || |||||||| || || ||||||| |||||| ||| |||| |||| ||||| Sbjct 1667836 TGACCGAGGATAGAATGGCGTCGTCTCTGACTGTGGTATCTCCCTTG--CCTTGCCATAC 1667893 Query 48142 AGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCT-TCCATCTCAAGCAAACGGAC 48200 |||||||| || || || ||||| | || | | | | |||| | | | | || | Sbjct 1667894 AGTTCACTCGTAGAGGCCTGATA-AAACTTGACTTGTTTCTCCAAATTACACGATCGAAT 1667952 Query 48201 TGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTC-GGGCATCT 48259 || || |||| | || |||| ||||| | | ||||||||| | ||| | Sbjct 1667953 GGCATCTAGCAGACGTAGACACCCTAGAGCATCCACATCAGAAGTATACTCTGCACAT-T 1668011 Query 48260 CAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCT 48319 ||||||| |||||||||||||||||||| ||||||||||| | ||| ||| | ||||| Sbjct 1668012 CAAACGATACCTTTACATGACTCTGTGCTCCAAGATTATATACCTCTGTTGGATTAACCT 1668071 Query 48320 GCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAAT 48378 |||| | || |||||||| || || |||||||| ||||||||||| || | |||| Sbjct 1668072 TGTGAACTATACTAACTAAATTGGTTGAATCTGTTAAATCTCCATAATGTAAATGTAAT 1668130 >seq21 Length=1919465 Score = 105 bits (116), Expect = 9e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || |||||||| |||||||| || ||| ||| |||||| | |||||||||||| || || Sbjct 194158 CCAGTGGCAATGACAAAATCCTCGGGTACTTTTTGTTGTAACATTAACCACATTGCTTCA 194217 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAA 47903 |||||||| | ||||||||||| ||||| |||| || ||| || |||||||| Sbjct 194218 ACATAATCACGAGCATGTCCCCAATCACGTTTAGCATTAATATTACCAAGATATAA 194273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494192033000