Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 212 7e-50 seq9 89.7 6e-13 seq1 87.8 2e-12 seq5 86.0 7e-12 seq16 82.4 9e-11 >seq3 Length=2750715 Score = 212 bits (234), Expect = 7e-50 Identities = 1141/1797 (63%), Gaps = 60/1797 (3%) Strand=Plus/Minus Query 75175 CTATCTTCAACGGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGT 75234 |||| | || || || ||| || |||| ||| || || || |||| ||||| || Sbjct 2513889 CTATTTGCACCGTGTCAATGATATGATCATCGAACGTCCCCAACACTTGTTGATGCGTGT 2513830 Query 75235 CGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTC 75294 | || | || |||||||| || |||||||| ||| | | || || |||||| | |||| Sbjct 2513829 CTCACTTGGTATCCACGGTGACGACATTGACGCTGCCATTGACACGTACGACCAATTGTC 2513770 Query 75295 CCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGAC--CG 75352 | || || | || || || ||||||||||| || ||||| |||||| | | Sbjct 2513769 AAACCGTTACTTTACGCATGCCACCCCAACCCTCTTTAACGCTGG--CACCAACTCGCCT 2513712 Query 75353 CAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGA 75412 || ||||| ||||| ||||| | | ||||| ||||| ||| | ||||| |||| Sbjct 2513711 CAAATGTCGAGTTGTTTCCTCGTGCAGATGAAGGACGACTCGATCGAAGGTATTTATGAC 2513652 Query 75413 ACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCAT 75472 || || | | | ||||| | || || ||| | || || |||||||| || | | || Sbjct 2513651 ACGCTCAAGCAATGTGCCCTCATTTCCAAGAGTGCCGGTGGTATTGGTATCGCCGTGCAC 2513592 Query 75473 GATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT-CAATCAGATGGTATTAT 75531 | | | ||| ||| ||| || || || || ||| | | || | ||| | | Sbjct 2513591 AAGATCCGTGCCGCACGATCCTATATCCGTGGAACCAACGGTACTAGCA-ACGGTTTGGT 2513533 Query 75532 TCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGTC---- 75587 |||||||| || || ||||||| || || || ||||| | |||| | || | | Sbjct 2513532 GCCAATGCTACGTGTGTTTAACGATACTGCCCGTTATGTCGACCAAG-GTGGAGGCAAGA 2513474 Query 75588 GCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTG 75647 | ||||| | | || |||||| | ||||||||||| | || || | ||||| || | Sbjct 2513473 GAAAGGGTGCGTTTGCTGTCTACCTCGAACCATGGCACTCGGACATTTTCGAGTTTCTCG 2513414 Query 75648 AGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGT 75707 | | | ||||| ||| | |||||| || | || ||||||| | || | Sbjct 2513413 ACCTTAAAAAGAACCACGGTAAAGAAGAGATGCGTGCCCGTGACCTCTTTTACGCACTCT 2513354 Query 75708 GGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTC 75767 || | | || || || ||| | || || || || || | ||||| | || |||| Sbjct 2513353 GGGTATCCGATCTCTTTATGGAACGTGTCGAACAGAATGCCGAGTGGTCGTTGTTTTGTC 2513294 Query 75768 CAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAA 75827 || || | || || || | |||| || || |||| | |||||| Sbjct 2513293 CAAACGAAGCTCCTGGATTGGCCGATTGCTACGGCGACAAGTTCCGCGATCTCTACCTTT 2513234 Query 75828 AGTATGAAGAGGAGGGTAGA---GCCAATGCGACTGTACCAGCCGCC-GATGTTTGGAAG 75883 || || || | || ||| | | || | || | | || | ||| Sbjct 2513233 CCTACGAGCAGACTCCTGGATTAGCCCGTAAGGTGGT-CAAGGCACAAGACCTCTGGTTT 2513175 Query 75884 GCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGT 75943 || || || | || || | |||||||| || ||||| || || |||||||| ||||| Sbjct 2513174 GCCATCATCGACTCGCAAATCGAGACTGGTACCCCATACATCCTCTACAAGGACGCTTGC 2513115 Query 75944 AACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAA 76003 || | ||| ||||||||||| | || || || | |||| ||||| || || || Sbjct 2513114 AATGAAAAGTCCAACCAAAAGAACCTTGGCACTATTCAATGCTCCAATCTCTGTACCGAG 2513055 Query 76004 ATTTTAGAGTACACAGATAAG--GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCC 76061 ||| | ||||||| | || || || || |||||||| | ||||| || || | Sbjct 2513054 ATTATCCAGTACACT--TCAGCCGACGAAGTAGCCGTTTGCAACCTTGCATCGATTGCTC 2512997 Query 76062 TTCCAAAGTATGTCAAT-GAAGA---------GAC-TCGCA-CTTTTGATTATGAAAAAC 76109 | ||||||| |||||| | || | | |||| | ||||| || | | | Sbjct 2512996 TACCAAAGTTTGTCAAGCGTAGTTCGCCATCGGCCGTCGCTTCATTTGACCATAACCATC 2512937 Query 76110 TTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTT 76169 | |||||||| || |||| || || ||| |||||||| | ||||| | Sbjct 2512936 TCGCCGAAATCACCCGTATCATTACACGTAACCTCAACAAGATCATTGACCGTAATTTCT 2512877 Query 76170 ATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTC 76229 | || || || || || || || ||||| || | || | || | || ||| Sbjct 2512876 ACCCAGTCGAAGAAGCTCGTCGTTCCAACATGCGTCATCGTCCAACCGGCATTGGAATTC 2512817 Query 76230 AAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGC-ATTTGATTCAGATGAAGCCAAG 76288 ||||| | || || || ||||| ||| || || |||||| ||| | ||| Sbjct 2512816 AAGGTTTGGCCGACGTCTTTATCGCTCTCCG-TATGCCATTTGACTCACCAGCTGCCGCC 2512758 Query 76289 GAGATGAATGCTCGTATCTTT--GAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTG 76346 | | || | | | || |||||||| || | || ||||| || || ||| Sbjct 2512757 GTCCTCAA--CAAGGAGATTGCCGAAACCATCTACTATGCTTCCCTTGACGCATCGTGTC 2512700 Query 76347 AATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGG 76406 ||||||| || | | ||| | || ||||| |||| ||||| ||||| |||||||| Sbjct 2512699 AATTGGCCGAGCGCGACGGTCCATACGAGACCTTTGCAGGTTCGCCCGCTTCCCAAGGTA 2512640 Query 76407 TGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAAC--TACGACTGGGATGTTCT 76464 | || || ||||| |||||||| | | ||||| || | | ||||||| | ||| Sbjct 2512639 TCCTACAATTTGACATGTGGGATG-TCCAACCAT-CTGCCCGTTGGGACTGGGCCGCTCT 2512582 Query 76465 CAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCA 76522 ||| |||| ||| | | ||||| |||||| || || | | ||||| |||||| Sbjct 2512581 CAAACAACGTATCGTCAAACACGGTCTACGTAAC--TCGTTGCTCGTCGCACCCATGCCA 2512524 Query 76523 ACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAAC 76582 ||||| |||||| |||| || | || || ||||| || |||||||||||||| | ||| Sbjct 2512523 ACAGCATCCACCTCACAGATTCTCGGCAACAATGAGTGTTTTGAACCATACACTAGCAAC 2512464 Query 76583 ATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAAT 76642 || ||| | | | | | || || |||||| | | ||||||||||| | || | Sbjct 2512463 ATTTACTCGCGCAAGGTCTTGGCCGGCGAGTTTACCGTCGTCAACAAGCAATTGCTCCAG 2512404 Query 76643 GACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATC---TCATGGTGAAAGCG 76699 || |||| | ||||| | ||| | || |||||| | | |||| | || Sbjct 2512403 GATCTCATGGCACTTGGTTTGTGGACTCCCGAAATGAAGAACCAAATCATTGCTAA---C 2512347 Query 76700 GGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACA 76759 |||| || | ||||| || || |||||| || || |||| | || ||| | Sbjct 2512346 CGTGGGTCGGTACAAAACGTCCAAGGTATCCCCGACGACCTCAAAGAGCTGTACAAGTCG 2512287 Query 76760 GTGTGGGAAA----TCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTT 76815 | ||||| | |||| | | ||||||| ||||| || || | ||| ||| Sbjct 2512286 GCTTGGGAGATTCGTCAACGTACA----CTCATTGATATGGCTGCCGACAGAGGTGCCTT 2512231 Query 76816 CATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTC 76875 || || |||||||| | || | || || | |||| | |||| ||| | Sbjct 2512230 TATCGACCAAAGTCAGTCGTTCAACGTGTTTATTGCCGAACCAAACTTTGCCAAACTCAC 2512171 Query 76876 TTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 ||||||||| | ||||| ||||| |||| ||||| || || |||||||| ||||| Sbjct 2512170 CTCTATGCATTTCTACGCCTGGAAGAAGGGTCTCAAGACTGGTATGTACTACCTCCG 2512114 >seq9 Length=911335 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 13562 AAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACTCTCATTGTC 13621 ||||||||||| || || || ||||| |||| | | | ||||| |||||| | Sbjct 389356 AAGTTGGATGAAGCCAATTTTGCTGGTACCAAGAAATCAGAAGACTGTACACTCATTTTA 389297 Query 13622 ACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTTGGTCGTGAT 13681 ||||| ||||| || || || || | || || ||| | || || |||||| | ||| Sbjct 389296 ACAGAAGGTGACTCTGCCAAGACATTGGCAACGGCTGGTATTTCAGTGGTTGGTTGGGAT 389237 Query 13682 CACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGGGA 13728 ||||| ||||| ||||||||||| |||||| | |||||||| || Sbjct 389236 CACTATGGTGTATTCCCACTTCGTGGTAAAGTCATCAATGTTCGTGA 389190 >seq1 Length=2485436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 13823 GAACTTCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGATGGTTCTCACATC 13882 || ||||| ||||| ||||||||||||| ||| |||||||||||||| || ||| Sbjct 2084047 GACCTTCGTTATGGAAAGATTATGATTATGACTGATCAAGATAATGATGGTTCACATATC 2083988 Query 13883 AAGGGTCTCATCCTAAATATGATCCACTACTTCTGGCC 13920 ||||||||||| | ||| | || ||||| |||||||| Sbjct 2083987 AAGGGTCTCATTATTAATTTTATTCACTATTTCTGGCC 2083950 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177538 CCAACCTCTTTGAAGCACATTTCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCG 177597 |||| ||||||||| | |||| ||||| || || ||||||||||| || || || Sbjct 1667489 CCAATCTCTTTGAACGCCTTTTCCGTAAACTCTCTGACCGAGTGTGTCTCACCAGTGGCA 1667548 Query 177598 ACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCC 177657 | ||| | || | || | |||||||| | ||| | |||||| || || |||||||| Sbjct 1667549 ATAACGAAATCTTGTGCTTGGTCTTGTTGCAACATCAACCACATTGCCTCTACATAGTCT 1667608 Query 177658 TTGGCATGACCCCAGTCTCT 177677 | ||||||||||| ||||| Sbjct 1667609 CTTGCATGACCCCAATCTCT 1667628 >seq5 Length=4166812 Score = 86.0 bits (94), Expect = 7e-12 Identities = 191/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Plus Query 64944 ATTGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCA 65003 ||| ||||| | ||| ||||| || | |||||| ||| |||||| | || || | Sbjct 871571 ATTAATTGATACATATATTAAAAATCCAGATGAAAAAAAGGTATTATTTAATGCAATTGA 871630 Query 65004 AACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTC 65063 |||| | |||||| | |||| || || | ||||| ||| |||| || || || || Sbjct 871631 AACTATTCCATGTGTAAAGAAAAAAGCTGACTGGGCTTTGAGATGGATT---ACCAACTC 871687 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGG 65123 || || ||||| || | | || ||||| || || |||||||| ||| || Sbjct 871688 CAAGTCGTTTGCCGAACGTTTGGTAGCTTTTGCCGCCGTTGAAGGTATCTTTTTCAGTGG 871747 Query 65124 GTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTC 65183 ||||| | || | |||| | |||||||| |||||||||||||| || ||| || Sbjct 871748 TAGTTTCTGTTCGATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGTCTCACCTTTTC 871807 Query 65184 AAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || | || || || || |||||||| || |||||| Sbjct 871808 CAACGAGTTGATCAGTCGTGACGAAGGTCTCCATTGCGACTTTGCC 871853 >seq16 Length=3468650 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 159113 TTATAAACTTTGGAATGAGTTTCTCCGGGTATTGATTTGGACCATAAACATTATTACAGC 159172 ||||||| |||||||| | |||||| ||| |||||||||||||||| ||||||||||| | Sbjct 1784521 TTATAAATTTTGGAATTAATTTCTCTGGGAATTGATTTGGACCATAGACATTATTACAAC 1784462 Query 159173 GAATTATTTTGAT 159185 || | || |||| Sbjct 1784461 GAGTAATGATGAT 1784449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569413572000