Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq21 105 1e-17 seq5 98.7 1e-15 seq2 93.3 6e-14 >seq21 Length=1919465 Score = 105 bits (116), Expect = 1e-17 Identities = 138/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || |||||||| || || || || || | |||||||| | ||| Sbjct 1444433 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACTCTTGAAGTCGAGGGATCT 1444492 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || | || || ||||| || ||||| || || || || ||| Sbjct 1444493 GACACTATCGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCTGATCAA 1444552 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || |||||||||||||| ||||||||| || ||||| || Sbjct 1444553 CAACGTCTTATCTTTGCTGGCAAGCAGCTCGAAGACGGCAGAACTTTGTCGGATTACAAC 1444612 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 1444613 AT-TCAAAAG 1444621 Score = 105 bits (116), Expect = 1e-17 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 155823 atgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || ||||| ||||| || || || || | |||||||| | ||| Sbjct 1445117 ATGCAAATCTTTGTAAAGACATTAACTGGTAAGACCATCACTCTTGAAGTCGAGGGATCT 1445176 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || |||| || || ||||| || ||||| || || || || ||| Sbjct 1445177 GACACCATTGAAAATGTCAAAACCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1445236 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | ||| || |||||||||||||| ||||||| | || || || | Sbjct 1445237 CAACGTCTTATCTTTGCTGGAAAGCAGCTCGAAGACGGCAGAACTCTTTCCGACTACA-- 1445294 Query 156003 ATATCCAAA--GAGGCGACGCTTCAT 156026 | ||||||| ||| | || || ||| Sbjct 1445295 ACATCCAAAAGGAGTCCACTCTCCAT 1445320 >seq5 Length=4166812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155821 aaatgcaaatatttattaaaaCATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 ||||||| || || |||||||| | || || || || ||||| ||||| || || | || Sbjct 207382 AAATGCAGATCTTCGTTAAAACACTCACAGGTAAGACCATTACCTTAGAGGTAGAGGGTT 207441 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 | || | ||| |||||| || ||| || ||||| || ||||| || || || || | Sbjct 207442 CCGACACTATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 207501 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||||| | | || | |||||||||||| |||||||| Sbjct 207502 AACAACGTCTTATCTTTGCCGGTAAGCAACTCGAAGA 207538 >seq2 Length=1770755 Score = 93.3 bits (102), Expect = 6e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 155788 tatttattgtttataataaaaatttatgtaataaaatgcaaatatttattaaaaCATTGA 155847 ||| |||| ||| | ||| | ||||| | || ||||| || || |||| || || | Sbjct 949082 TATCTATTTTTTTTTATATAC-TTTATAGCA-AACATGCAGATCTTCGTTAAGACTTTAA 949025 Query 155848 CTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATA 155907 | ||||| || || || | ||||| |||| ||| |||| || |||||| || || Sbjct 949024 CAGGAAAGACCATCACTCTTGAAGTTGAAGGTTCAGATACCATCGAAAACGTCAAGGCTA 948965 Query 155908 AAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGC 155967 | || ||||| || ||||| || || || || |||||| | | || | ||||||||||| Sbjct 948964 AGATCCAAGACAAGGAAGGTATCCCACCCGATCAACAACGTCTTATCTTTGCCGGTAAGC 948905 Query 155968 AGCTCGAAGA 155977 | |||||||| Sbjct 948904 AACTCGAAGA 948895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871771290000