Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq21 122 2e-22 seq24 114 2e-20 seq2 113 8e-20 seq5 104 4e-17 >seq21 Length=1919465 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | ||| | || || ||| || ||||| Sbjct 1444434 ATACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCC 1444375 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| |||||||||||||| |||||||| | | ||||| |||||| Sbjct 1444374 GACAAAGTTCTGCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGT 1444315 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| ||||| || || ||| Sbjct 1444314 GGAATACCTTCCTTGTCTTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGAACCTTCA 1444255 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||| ||||||||||| ||||| | || || ||||| Sbjct 1444254 ACCTCCAAGGTAATGGTCTTACCAGTTAAAGTTTTTACAAAAATTTGCAT 1444205 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | ||| | || || ||| ||||| || Sbjct 1352609 ATACCACCACGGAGACGAAGGACGAGATGGAGAGTTGATTCCTTTTGAATGTTATAGTCG 1352550 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | |||| || ||||||||||| |||||||| | | ||||| |||||| Sbjct 1352549 GACAAAGTTCTTCCGTCTTCTAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGT 1352490 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || ||||| || || ||||| || ||| Sbjct 1352489 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTTACGTTTTCAATGGTATCGGATCCTTCC 1352430 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || ||||||||||| | || || | ||| || ||||| Sbjct 1352429 ACTTCCAAAGTGATAGTTTTACCAGTGAGGGTCTTGACGAAAATTTGCAT 1352380 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | ||| | || || || |||||||| Sbjct 1352381 ATACCACCACGGAGACGGAGGACGAGATGGAGAGTTGATTCCTTTTGGATGTTATAATCG 1352322 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || ||||||||||| ||||| |||||||| ||||| |||||| Sbjct 1352321 GAAAGAGTACGTCCGTCTTCTAATTGTTTACCTGCAAAGATTAATCTTTGTTGATCAGGT 1352262 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 1352261 GGAATACCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCGATAGTGTCGGATCCTTCG 1352202 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || || || ||||| | || || | || || ||||| Sbjct 1352201 ACTTCGAGGGTGATTGTCTTGCCAGTGAGGGTCTTGACAAAGATTTGCAT 1352152 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | ||| | || || ||| || ||||| Sbjct 1445118 ATACCACCACGGAGACGAAGGACGAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCC 1445059 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| |||||||||||||| |||||||| | | ||||| |||||| Sbjct 1445058 GACAAAGTTCTGCCGTCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCAGGT 1444999 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| || || || || || Sbjct 1444998 GGAATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTCTCAATGGTGTCAGATCCCTCA 1444939 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| ||||| |||||||| | || || | || || ||||| Sbjct 1444938 ACTTCAAGAGTGATGGTCTTACCAGTGAGGGTCTTTACAAAGATTTGCAT 1444889 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||| | || || | || | ||| | ||| | ||| || || || || || | Sbjct 1445345 TACCACCACGGAGACGGAGGACGAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGG 1445286 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | | || || |||| || | || || |||||||| || | | ||||| ||||||| Sbjct 1445285 AAAGAGTTCTGCCGTCTTCGAGCTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTG 1445226 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || ||||| || ||||| || || |||| ||||| || || || || || | Sbjct 1445225 GAATACCTTCCTTGTCTTGGATCTTGGTTTTGACATTTTCAATGGTGTCAGATCCCTCGA 1445166 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| ||||| |||||||||||||| || | || || ||||| Sbjct 1445165 CTTCAAGAGTGATGGTCTTACCAGTTAATGTCTTTACAAAGATTTGCAT 1445117 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | ||| | ||| || || || || || Sbjct 1444890 ATACCACCACGGAGACGGAGGACAAGATGGAGAGTGGACTCCTTTTGGATGTTGTAGTCG 1444831 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || || |||| || ||||||||||| ||||| || | | ||||| |||||| Sbjct 1444830 GAAAGAGTTCTGCCGTCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGT 1444771 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || || || || || || || ||| Sbjct 1444770 GGAATACCTTCCTTGTCTTGAATCTTGGTCTTGACGTTTTCAATGGTGTCCGAACCTTCG 1444711 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| |||||||| | || || | || || ||||| Sbjct 1444710 ACTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 1444661 >seq24 Length=3408800 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || ||||||||||| || ||||| | | ||||| |||||||| || ||||| || Sbjct 192939 TCCTCTAATTGTTTACCGGCGAAAATGAGACGTTGTTGATCAGGTGGGATACCTTCCTTG 192998 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || | || ||||| ||||| || || ||||||||| | |||||| Sbjct 192999 TCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAGCCTTCTACTTCCAAGGTAATG 193058 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||||||| ||||||||||||| || || |||||| Sbjct 193059 GTTTTACCTGTTAATGTTTTAACAAAGATTTGCATT 193094 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | ||||| || || || || ||||| Sbjct 192408 ATACCACCACGGAGACGAAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTGTAATCG 192467 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| |||| || ||||||||||| ||||| || | | ||||| |||||| Sbjct 192468 GAAAGAGTTCGGCCGTCTTCTAATTGTTTACCGGCAAAGATGAGACGTTGTTGATCAGGT 192527 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| ||||| || || ||| Sbjct 192528 GGGATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCAGAACCTTCG 192587 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| || || || ||||| || | || || ||||| Sbjct 192588 ACTTCCAAGGTGATGGTCTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 192637 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 ||||||| | || || | || | ||| | ||| | || || ||| || ||||| | Sbjct 191952 TACCACCACGGAGACGGAGGACAAGATGGAGAGTGGATTCCTTTTGAATGTTGTAATCCG 192011 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | | | || | || || ||||||||||| ||||| || | | ||||| ||||||| Sbjct 192012 AGAGGGTTCTGCCATCCTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGTG 192071 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || ||||| || ||||| || || | || || || || || || || ||| | Sbjct 192072 GGATACCTTCCTTGTCTTGAATCTTGGTCTTAACGTTTTCAATGGTGTCGGATCCTTCGA 192131 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| ||||| |||||||| ||||| || | || |||||||| Sbjct 192132 CTTCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACAAAGATCTGCAT 192180 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | ||| | || || || || || || Sbjct 192636 ATACCACCACGGAGACGGAGGACGAGATGGAGAGTGGATTCCTTTTGGATGTTGTAGTCC 192695 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| || ||||||||||| ||||| || | | ||||| |||||| Sbjct 192696 GACAAAGTTCTGCCGTCTTCTAATTGTTTACCGGCAAAGATAAGACGTTGTTGATCAGGT 192755 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| ||||| || || ||| Sbjct 192756 GGGATACCTTCCTTGTCTTGAATCTTGGTCTTGACATTTTCGATAGTGTCGGATCCTTCG 192815 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || ||||| |||||||| | || || | || || ||||| Sbjct 192816 ACTTCGAGGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAAATTTGCAT 192865 >seq2 Length=1770755 Score = 113 bits (124), Expect = 8e-20 Identities = 171/242 (71%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||||||| || | || | ||| | |||| || || || || ||||| Sbjct 948820 ATACCACCTCTAAGGCGGAGAACGAGATGGAGGGTAGATTCCTTTTGGATGTTGTAATCC 948879 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | ||| ||||| ||||| || | | ||||| || ||| Sbjct 948880 GAGAGGGTACGACCGTCTTCGAGTTGCTTACCGGCAAAGATAAGACGTTGTTGATCGGGT 948939 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || ||| || || || || |||||||| ||| Sbjct 948940 GGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTATCTGAACCTTCA 948999 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTATA 172078 ||||| ||||| ||||| || || ||||| || |||| ||| |||||||| ||| |||| Sbjct 949000 ACTTCAAGAGTGATGGTCTTTCCTGTTAAAGTCTTAACGAAGATCTGCATGTTTGCTATA 949059 Query 172079 AA 172080 || Sbjct 949060 AA 949061 >seq5 Length=4166812 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || | ||| | ||||| ||| || || || || || || Sbjct 207611 ACCACCACGGAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGA 207552 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || |||| || | ||| ||||| ||||| || | | |||||||||||||| Sbjct 207551 GAGGGTACGACCGTCTTCGAGTTGCTTACCGGCAAAGATAAGACGTTGTTGGTCAGGTGG 207492 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||| || ||||| || ||| || || || ||||| || || ||||| Sbjct 207491 GATACCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATAGTGTCGGAACCCTCTAC 207432 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT 172071 |||| |||||||| ||||| || | |||||||| ||| |||||||||| Sbjct 207431 CTCTAAGGTAATGGTCTTACCTGTGAGTGTTTTAACGAAGATCTGCATTT 207382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135717145000