Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq20 170 6e-37 seq13 154 4e-32 seq1 86.0 2e-11 >seq20 Length=941765 Score = 170 bits (188), Expect = 6e-37 Identities = 223/306 (73%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 || |||||| ||||| | ||||||||| || ||||| ||| || || || || || Sbjct 31388 TCCTCCATAGCCTTGACGAGACGACGCTGGATGTAACCGGTTTCGGACGTCTTGACGGCC 31329 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AG 302690 ||||| || ||||| |||||||||||||||| ||||| || | ||||| || ||| || Sbjct 31328 GTATCGATGAGACCTTCACGACCACCCATAGCGTGGAAAAAGAACTCTTGGGG-CGTCAG 31270 Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750 || | | | ||| | || || |||||||| |||||| || |||| ||| || Sbjct 31269 ACCTCTGAGGTACGAGTTTTCGACAAAACCACGACTCTCGGGGCCATAGTCGTCCTTTGT 31210 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || ||||||| || || || | | ||||| ||||||||||||| || || ||||| || Sbjct 31209 GAAATGTGGCAATGTTCTATTTTGAAAGCCGAATGGGATACGCTTACCTTCGACGTTTTG 31150 Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATT 302870 ||| || | || | |||||||||||||| || | | | |||||||| || || || Sbjct 31149 CTGACCGACACAGGCCATCATCTGCGAAATGTTGATAAAAGAACCCTTGGAACCGGCGTT 31090 Query 302871 TACCAT 302876 |||||| Sbjct 31089 TACCAT 31084 >seq13 Length=1327167 Score = 154 bits (170), Expect = 4e-32 Identities = 189/258 (73%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 ||| || |||||||| ||| || | ||||| | ||| |||||| |||| | || Sbjct 629182 GGCAATGAGACCACAGATATCGCAAATGTGGACACGATAACTGTCAGATTGGTCAAAGAG 629123 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 || ||||| ||| ||| |||||||| ||||||||||||||||||||||| || || Sbjct 629122 ACGTTCCTTGAGGAATTGAGCGGCACCGTGAGAAATCATACAATCACGCTCCATCTCTCC 629063 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 |||||||||||||||||| | | | ||| || | || ||||| |||||| | | Sbjct 629062 GAAACGAAGACCACCATCTCTGGAACGACCTTCTACGGGTTGACGGGTGAGAATTTGGAC 629003 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| |||| || || ||| |||| ||||||||||||||||| |||||| | Sbjct 629002 TGGACCTCTGGAACGAGAGTGAATCTTGTCATCGACCATATGCTTGAGACGTTGGTAGTA 628943 Query 251643 TGCGGGACCGATGAAGAT 251660 | |||||||| ||||| Sbjct 628942 GGTTGGACCGATAAAGAT 628925 Score = 84.2 bits (92), Expect = 6e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||||| ||||||||||||||| ||||| || || | ||| ||||||||||| | Sbjct 629100 GCACCGTGAGAAATCATACAATCACGCTCCATCTCTCCGAAACGAAGACCACCATCTCTG 629041 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACC-CTGAGCACGATAATT 233391 || | ||| | || | |||||| || | || |||||| ||| | |||| | | Sbjct 629040 GAACGACCTTCTACGGGTTGACGGGTGAGAATTTGGACTGGACCTCTG-GAACGAGAGTG 628982 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATAGTTC 233451 ||| || || | ||||||||||| || | || || ||||| ||||| | || Sbjct 628981 AATCTTGTCATCGACCATATGCTTGAGACGTTGGTAGTAGGTTGGACCGATAAAGATTTG 628922 Query 233452 TGCGTGTAATTGTTC-CCCAGATTCACCGCTGTATAAAACTTCATTACC 233499 |||| ||| | | |||| | |||| |||| | ||||||| ||| Sbjct 628921 AGCGT-CCATTCTACGACCAGTGTGACCGTTGTACATGACTTCATGACC 628874 >seq1 Length=2485436 Score = 86.0 bits (94), Expect = 2e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 |||||||| | ||||| |||||||||||||||||| |||| ||| ||||||||| | Sbjct 968846 GATGCACCATAACCAATCAAACAATCACGCTCCATTTCTCCGAGACGGAGACCACCACCA 968787 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 ||||| ||||| |||| ||||| | ||||| Sbjct 968786 CGAGCTCTACCTTCGGTCGGCTGTCTGGTGAG 968755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817128558425