Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3 140 4e-27 seq5 132 6e-25 seq8 113 6e-19 seq24 96.9 4e-14 >seq3 Length=2750715 Score = 140 bits (154), Expect = 4e-27 Identities = 191/265 (72%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || || || || |||||||| || || ||||| ||||| | |||||| | Sbjct 2513488 TGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCACCAAACCGTTG--C 2513545 Query 1630126 TCG--CCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGC 1630183 | | |||||||| || | |||| | ||||| || | ||||||| |||| | | Sbjct 2513546 TAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTTGTGCACGGCGATAC 2513605 Query 1630184 CGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCT 1630243 | || || ||||| |||||| ||||| || || || ||||||||||| || || || | Sbjct 2513606 CAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGTCATAAATACCTT 2513665 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 ||||||||||| ||||||| | |||||| || || ||| |||| || |||| Sbjct 2513666 CGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTTGAGGCGAGTTGGTGC 2513725 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGC 1630328 | ||||| ||||| || || || || Sbjct 2513726 CAGCGTTAAAGAGGGTTGGGGTGGC 2513750 Score = 138 bits (152), Expect = 1e-26 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 1628372 CGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCAC 1628431 |||||||||| ||| || || || || ||| |||||||| | |||||| ||| || Sbjct 2513258 CGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGGACAAAACAACGACCACTCGGCAT 2513317 Query 1628432 -CGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGC 1628490 | || | | || ||||||||| || | ||| ||||||||||||||||| || Sbjct 2513318 TCTGTT-CGACACGTTCCATAAAGAGATCGGATACCCAGAGTGCGTAAAAGAGGTCACGG 2513376 Query 1628491 GCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCG 1628550 || || |||| || || |||||||||||||| |||||||| | |||| |||||| | | Sbjct 2513377 GCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGTCGAGAAACTCGAAAATGTCCGAG 2513436 Query 1628551 TGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||||| || || |||||| ||||| || ||||| | |||||| || || Sbjct 2513437 TGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTCTCTTGCCTCCACC 2513486 >seq5 Length=4166812 Score = 132 bits (146), Expect = 6e-25 Identities = 145/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||||||||| |||||||||| |||||| ||||| ||| || |||||||| || ||||| Sbjct 871835 ACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGACCTGGCATGAGACCACGCTT 871776 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||| | |||||||| || ||||||||| || || ||||||||||| Sbjct 871775 CTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGATACCTTCAACGGCGGCAAA 871716 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCA 869358 | | | || |||||||| | | | | ||| | ||||| ||| ||||| Sbjct 871715 AGCTACCAAACGTTCGGCAAACGACTTGGAG------TTGGTAATCCATCTCAAAGCCCA 871662 Query 869359 GTCGGCCTTTTTC 869371 ||| || |||||| Sbjct 871661 GTCAGCTTTTTTC 871649 >seq8 Length=1908399 Score = 113 bits (124), Expect = 6e-19 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1592099 AAGGACCAGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAG 1592158 |||||| ||||||| || ||||| | || ||||| || || ||| | || || Sbjct 718876 AAGGACGAGAAGCGTTTGGATGACATTCCACCATGGGATCGTGAATTCTGCAAGGTTGAC 718935 Query 1592159 CAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTC 1592218 || || ||||||||||| ||||| | || |||||||| | ||||||||||| || | Sbjct 718936 CAACCAACCCTCTTTGAATTGATTTTGGCTGCCAACTATTTGGACATCAAGCCACTCTTG 718995 Query 1592219 GATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGC 1592278 || || |||||| | || |||||||||||| |||||| | || ||||| ||| | Sbjct 718996 GACGTTACATGCAAGACCGTTGCCAACATGATCCGTGGCAAGACCCCAGAGGAAATCAGA 719055 Query 1592279 AAGACCTTTAACATCAAGTACG 1592300 |||| || || |||||| ||| Sbjct 719056 AAGATTTTCAATATCAAGAACG 719077 >seq24 Length=3408800 Score = 96.9 bits (106), Expect = 4e-14 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTTTGCGACG---TCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCC 1592188 |||||||||||||| | | | |||| || | || |||||||||||||||||||| Sbjct 2705460 TGGGACAAGGAGTTCGTCAAGGCCCTCGACCATACTACTCTCTTTGAGTTGATCCTCGCT 2705401 Query 1592189 GCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATG 1592248 |||||||| ||||| |||||| ||| | || || |||||| |||| ||||||||| Sbjct 2705400 GCCAACTATCTCGATATCAAGGGTCTCTTGGACGTTACCTGCAAGACTGTCGCCAACATG 2705341 Query 1592249 ATCAAGGGCAAGTCGCCCGAGGAGATC 1592275 ||| | |||| | || || || ||| Sbjct 2705340 ATCCGTGCCAAGACCCCAGAAGAAATC 2705314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137148382925