Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq24 107 2e-18 seq21 104 2e-17 >seq24 Length=3408800 Score = 107 bits (118), Expect = 2e-18 Identities = 146/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 ||||||||| ||||| ||||| ||||| || |||||||||||| | ||| || || | Sbjct 193094 AATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAAGGCTC 193035 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| ||| ||| | || || |||||| ||||| ||||| | || || Sbjct 193034 TGAC---ACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGA 192978 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||||||| | || |||| || |||||||| | ||||||| ||||| | ||||||| Sbjct 192977 TCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTA 192918 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||| ||||| ||||| || Sbjct 192917 CAACATCCAAAAGGAATCCAC 192897 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--CT 110329 |||||||| |||||||| || || |||||||| ||||| ||| | ||| || || || Sbjct 192637 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCT 192578 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| ||| | || || |||||| ||||| ||||| | || ||| Sbjct 192577 GAC---ACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGAT 192521 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | || || | ||| |||||||| | || || | | |||| | | |||||| Sbjct 192520 CAACAACGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTAC 192461 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||| ||||| |||||||| Sbjct 192460 AACATCCAAAAGGAATCTAC 192441 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || |||||||| || || || || || ||||| || | ||| || || | Sbjct 192180 ATGCAGATCTTTGTCAAGACATTGACTGGTAAGACCATCACTCTTGAAGTCGAAGGATC- 192122 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | || || |||||| ||||| ||||| | || ||||| Sbjct 192121 CGACACCATTGAAAACGTTAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCA 192062 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| | ||||| | ||| |||||||| | ||||||| |||||| | |||||||||| Sbjct 192061 ACAACGTCTTATCTTTGCCGGTAAACAATTAGAGGATGGCAGAACCCTCTCGGATTACAA 192002 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||| ||||| || Sbjct 192001 CATTCAAAAGGAATCCAC 191984 >seq21 Length=1919465 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||||||||| || || ||||||||| | || || | Sbjct 1444205 ATGCAAATTTTTGTAAAAACTTTAACTGGTAAGACCATTACCTTGGAGGTTGAAGGTTCT 1444264 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || ||||| ||||| ||||| | || |||||| Sbjct 1444265 GACACTATTGAAAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAA 1444324 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || |||| ||| |||||||| |||| || | |||||| || ||||||||||| Sbjct 1444325 CAACGTCTCATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGGATTACAAC 1444384 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| ||||| || Sbjct 1444385 ATTCAAAAGGAATCCAC 1444401 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| |||||||| || || |||||||| ||||| || | ||| ||| || Sbjct 1444433 ATGCAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACTCTTGAAGTCGAGGGATCT 1444492 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| ||| | || || ||||| ||||| ||||| | || ||| Sbjct 1444493 GAC---ACTATCGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCTGAT 1444549 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | ||||| | ||| || || ||||| || || | |||||| || |||||||| Sbjct 1444550 CAACAACGTCTTATCTTTGCTGGCAAGCAGCTCGAAGACGGCAGAACTTTGTCGGATTAC 1444609 Query 110450 AACATTCAAAAAGAATCTAC 110469 ||||||||||| ||||| || Sbjct 1444610 AACATTCAAAAGGAATCCAC 1444629 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 110357 AAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAA 110416 |||||| ||||| ||||| | || ||||||||| | || |||| ||| |||||| Sbjct 1444973 AAGATTCAAGACAAGGAAGGTATTCCACCTGATCAACAACGTCTCATTTTTGCCGGTAAA 1445032 Query 110417 CAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTAC 110469 || |||| || | |||||| || ||||||||||||||||||| ||||| || Sbjct 1445033 CAATTGGAAGACGGCAGAACTTTGTCGGATTACAACATTCAAAAGGAATCCAC 1445085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841474212325