Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 138 2e-26 seq8 125 1e-22 seq3 116 6e-20 >seq5 Length=4166812 Score = 138 bits (152), Expect = 2e-26 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| ||||||||||| |||||| |||| ||| || |||||||| || ||||| Sbjct 871835 ACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGACCTGGCATGAGACCACGCTT 871776 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||| | ||||||||| || ||||||||| || || ||||||||||| Sbjct 871775 CTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAGATACCTTCAACGGCGGCAAA 871716 Query 794460 GCCGACGAGCCGCTCGGCAAA 794480 | || | || |||||||| Sbjct 871715 AGCTACCAAACGTTCGGCAAA 871695 Score = 104 bits (114), Expect = 4e-16 Identities = 203/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 793926 TCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCC 793985 ||||||||||| | ||| | | ||| || |||| |||||||| || || ||||| Sbjct 872122 TCGAAAAAGTTTGCCTTTCGCATGAGTGAAATCATTTCCATCCAATCAAATGGATTGGCA 872063 Query 793986 GTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATG 794045 | |||| |||| | | || ||||| | || || || ||||| |||||||||| Sbjct 872062 GAATTGTAGATTTTCTTGTAGCCAAGCGAGACGAGGAGACGATCGGCACAGAATTCAATG 872003 Query 794046 TACTGGCACATGAGGGCGGC-GTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104 || | | |||| || | ||||||||| ||||| | ||||||| ||| || |||| Sbjct 872002 TATTTGGACAT-TTCACGACTGTTCATGCCAATGAGATCGACGGGCAACGAGTCAGTGAC 871944 Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACGTC-GGACGACG 794163 ||| || || || |||||||| || |||| || | | ||| |||| || Sbjct 871943 AAATTCCTTTTCACATTCGACGGCGTCACGAATGA--TGGATTCGATGGTCTTGACGTCG 871886 Query 794164 -GCTTGTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 |||| | | |||| | | ||||| || ||||||||||||||||| |||||| Sbjct 871885 AGCTTATTGTTGAGCTTGTTATAGAGAAGACAGGCAAAGTCGCAATGGAGACCT 871832 >seq8 Length=1908399 Score = 125 bits (138), Expect = 1e-22 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 2035560 AAGGACGACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGAC 2035619 |||||||| ||||| || |||||| | || ||||| | || ||| |||| ||| Sbjct 718876 AAGGACGAGAAGCGTTTGGATGACATTCCACCATGGGATCGTGAATTCTGCAAGGTTGAC 718935 Query 2035620 CAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTC 2035679 ||||| ||||||||||| ||||| | || |||||||| | ||||||||||| ||| | Sbjct 718936 CAACCAACCCTCTTTGAATTGATTTTGGCTGCCAACTATTTGGACATCAAGCCACTCTTG 718995 Query 2035680 GATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGC 2035739 || | ||||||||||| |||||| | ||| |||||| | || ||||| ||| | Sbjct 718996 GACGTTACATGCAAGACCGTTGCCAACATGATCCGTGGCAAGACCCCAGAGGAAATCAGA 719055 Query 2035740 AAGACCTTTAACATCAAGTACG 2035761 |||| || || |||||| ||| Sbjct 719056 AAGATTTTCAATATCAAGAACG 719077 >seq3 Length=2750715 Score = 116 bits (128), Expect = 6e-20 Identities = 188/266 (71%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| || || || |||||||| || || ||||| ||||| | |||||| | Sbjct 2513488 TGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCACCAAACCGTTG--C 2513545 Query 2073601 TCG--CCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGC 2073658 | | |||||||| || | |||| | | ||| || | ||||||| |||| | | Sbjct 2513546 TAGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTTGTGCACGGCGATAC 2513605 Query 2073659 CGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCT 2073718 | || || ||||| |||||| ||||| || || | || ||||| || || || || | Sbjct 2513606 CAATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGTCATAAATACCTT 2513665 Query 2073719 CGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCG-CCGTG 2073777 ||||||||||| ||||||| | || || || || ||| |||| |||| | ||| Sbjct 2513666 CGATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTTG-AGGCGAGTTGGTG 2513724 Query 2073778 CCGGCATTGAAGAGCGTGGGCGTCGC 2073803 || || || ||||| || || || || Sbjct 2513725 CCAGCGTTAAAGAGGGTTGGGGTGGC 2513750 Score = 105 bits (116), Expect = 1e-16 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 2071784 CGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGC 2071843 |||||| ||| ||| || || || || ||| || ||||| | |||||| ||| | Sbjct 2513258 CGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGGACAAAACAACGACCACTCGGCAT 2513317 Query 2071844 -CAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGC 2071902 | || | || || |||||| || ||| | ||| || |||||||||| || || Sbjct 2513318 TCTGTT-CGACACGTTCCATAAAGAGATCGGATACCCAGAGTGCGTAAAAGAGGTCACGG 2513376 Query 2071903 GCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCG 2071962 || || |||| || || |||||||||||||| |||||||| | |||| | ||| | | Sbjct 2513377 GCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGTCGAGAAACTCGAAAATGTCCGAG 2513436 Query 2071963 TGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||| || || |||||| ||||| || ||||| | |||||| || || Sbjct 2513437 TGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTCTCTTGCCTCCACC 2513486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243740635975