Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 167 2e-36 seq5 87.8 2e-12 >seq3 Length=2750715 Score = 167 bits (184), Expect = 2e-36 Identities = 533/813 (66%), Gaps = 14/813 (2%) Strand=Plus/Plus Query 147935 GTAGGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGC 147994 || |||||||| |||| || || |||||||| || |||||||| ||| | ||| || Sbjct 2512095 GTCGGCAGCGGCACGAGTACGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGC 2512154 Query 147995 GTAGTCGTGCACCGACGACATGAGCGTGT--ACGTCGGGTGCGGCAC-AAACAGATTAAA 148051 |||| |||| || | |||| || | || ||| ||||| ||||| || || Sbjct 2512155 GTAGAAATGCATAGAGG---TGAGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAA 2512211 Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCG-CTTTA 148110 |||||| || ||||| || || || || | ||| || ||||| ||||||||| | || Sbjct 2512212 CGACTGACTTTGGTCGATAAAGGCACCTCTGTCGGCAGCCATATCAATGAGTGTACGTTG 2512271 Query 148111 TCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGC 148170 | |||||||| |||| |||||||||| |||| | ||||| || || | || | Sbjct 2512272 ACGA-ATCTCCCAAGCCGACTTGTACAGCTCTTTGAGGTCGTCGGGGATACCTTGGACGT 2512330 Query 148171 GCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGA 148230 || ||||| || |||| |||| || || || ||||||| || | | | Sbjct 2512331 TTTGTACCGACCCACGGTTAGCAATGATTTGGTTCTTCATTTCGGGAGTCCACAAACCAA 2512390 Query 148231 GCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGC 148290 | | || || || | || || | || || || || |||||||||||| | || Sbjct 2512391 GTGCCATGAGATCCTGGAGCAATTGCTTGTTGACGACGGTAAACTCGCCGGCCAAGACCT 2512450 Query 148291 GCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCG 148350 ||| || | |||||| || | |||||||| |||| |||||||| | |||||| | Sbjct 2512451 TGCGCGAGTAAATGTTGCTAGTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTG 2512510 Query 148351 CGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTA 148410 ||| | ||| || |||||| || || |||| |||||| || | |||| | || | Sbjct 2512511 AGGTGGATGCTGTTGGCATGGGTGCGACGAGCAACGAGTTACGTAGACCGTGTTTGACGA 2512570 Query 148411 TTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGT 148470 | | || ||||| ||||||||||| | | || ||| || | ||||||||| Sbjct 2512571 TACGTTGTTTGAGAGCGGCCCAGTCCCAACGGGCAGATGGTTGGACATCCCACATGTCAA 2512630 Query 148471 ACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCT-GTACGGTCCGT-GCGC 148528 | || || || || || ||| |||| ||| | | || ||| || |||| ||| Sbjct 2512631 ATTGTAGGATACCTTGGGAAGC-GGGCGAACCTGCAAAGGTCTCGTATGGACCGTCGCG- 2512688 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | | |||| || || || || || | | ||||| || || |||||||| | | | Sbjct 2512689 CTCGGCCAATTGACACGATGCGTCAAGGGAAGCATAGTAGATGGTTTCGGCAATCTCCTT 2512748 Query 148589 GTTGAGCAGCGCCGCCGACTCG-CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGG 148647 |||||| | || || | || | || | |||||||| || | ||| |||||| Sbjct 2512749 GTTGAGGA-CGGCGGCAGCTGGTGAGTCAAATGGCATACGGAGAGCGATAAAGACGTCGG 2512807 Query 148648 CAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCT 148707 | | || || | || | ||| | || || || |||||||| | || || | Sbjct 2512808 CCAAACCTTGAATTCCAATGCCGGTTGGACGATGACGCATGTTGGAACGACGAGCTTCTT 2512867 Query 148708 CGAGCGGATAGTGGTTGCGGTCGATGATCTTGT 148740 ||| || ||| || ||||| |||||||||| Sbjct 2512868 CGACTGGGTAGAAATTACGGTCAATGATCTTGT 2512900 >seq5 Length=4166812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || ||||| || || || ||||| ||| | || |||| ||| ||||| ||||| | Sbjct 207580 GTAGACTCCTTTTGGATGTTGTAGTCGGAGAGGGT--ACGACCGTCTTCGAGTTGCTTAC 207523 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || || || ||||| || ||||| ||||||||||| |||||| || Sbjct 207522 CGGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTAGCCT 207463 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||||| ||| || || | ||| | ||| || || || || | Sbjct 207462 TGACGTTTTCGATAGTGTCGGAACCCTCTACCTCTAAGGTAATGGTCTTACCTGTGAGTG 207403 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| Sbjct 207402 TTTTAACGAAGATCTGCAT 207384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420648931000