Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 183 7e-41 seq1 86.0 1e-11 >seq3 Length=2750715 Score = 183 bits (202), Expect = 7e-41 Identities = 433/645 (67%), Gaps = 17/645 (3%) Strand=Plus/Minus Query 110280 TATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTA 110339 ||||||||||||| ||| ||||| ||| |||||||| || || |||||| | ||||| Sbjct 2513942 TATACTCGTGACTTTGAGTATGACTTTTTCGGTTTCAAGACACTCGAACGTTCCTATTTG 2513883 Query 110340 CTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATT 110399 | |||||||||| |||||| |||||||| |||||| |||| | ||||| | || Sbjct 2513882 CACCGTGTCAATGATATGATCATCGAACGTCCCCAACACTTGTTGATGCGTGTCTCACTT 2513823 Query 110400 GGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAG 110459 ||||| || || | || ||| | |||| ||||| || || ||| || ||| Sbjct 2513822 GGTATCCACGGTGACGACATTGACGCTGCCATTGACACGTACGACCAATT--GTCAAACC 2513765 Query 110460 AAAGCTATTC--ATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGG 110517 || | | |||| || || ||||| |||||||| || || || ||| || Sbjct 2513764 GTTACTTTACGCATGCCACCCCAACCCTCTTTAACGCTGGCACCAACTCGCCTCAAATGT 2513705 Query 110518 CTTCTTGCTTTCTTCTAGGA-ATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTT 110576 | ||| |||| || | | || || || || || || |||||||||||||| | || Sbjct 2513704 CGAGTTG-TTTCCTCGTGCAGATGAAGGACGACTCGATCGAAGGTATTTATGACACGCTC 2513646 Query 110577 AAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATT 110636 || || ||| || ||||| || | | || || |||||||| ||| || | || Sbjct 2513645 AAGCAATGTGCCCTCATTTCCAAGAGTGCCGGTGGTATTGGTATCGCCGTGCACAAGATC 2513586 Query 110637 CGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT-TCAACTGGACTTGTTCCAAT 110695 || | | || | ||||| | | || ||| || |||| || | || ||||| Sbjct 2513585 CGTGCCGCACGATCCTATATCCGTGGAACCAACGGTACTAGCAAC-GGTTTGGTGCCAAT 2513527 Query 110696 GTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGT---GGTAAGAGAAATGG 110752 | || | || || ||||| ||||| ||||| | |||||| || |||||||| || Sbjct 2513526 GCTACGTGTGTTTAACGATACTGCCCGTTATGTCGACCAAGGTGGAGGCAAGAGAAAGGG 2513467 Query 110753 CTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCG 110812 | |||||| |||| |||||||| ||||| || || || || || || | || ||| Sbjct 2513466 TGCGTTTGCTGTCTACCTCGAACCATGGCACTCGGACATTTTCGAGTTTCTCGACCTTAA 2513407 Query 110813 TAAAAATCAAGGATTTGAAGAACAAA---GAGCACGTGATTTATTTTATGCAATGTGGAT 110869 || || || || | ||||| | | | || ||||| | ||||| ||| | ||| | Sbjct 2513406 AAAGAACCACGG---TAAAGAAGAGATGCGTGCCCGTGACCTCTTTTACGCACTCTGGGT 2513350 Query 110870 TTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTC 110914 || ||| | || ||| ||||||| || | |||| | |||||| Sbjct 2513349 ATCCGATCTCTTTATGGAACGTGTCGAACAGAATGCCGAGTGGTC 2513305 >seq1 Length=2485436 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 279872 ATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTG-TTTCAAAAGAAAATT 279930 |||||||||||||||||| |||||||| ||| | || | || ||| |||||||| || Sbjct 2083507 ATGGATGGTTTGAAACCTGGTCAGCGTAAAATTCT-TTATGCTGCTTTTAAAAGAAAGTT 2083449 Query 279931 GGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCA 279990 | || ||||| || ||||| || | ||||||||| | |||||| | | ||||| Sbjct 2083448 GACAAGTGAAATCAAAGTGGCTCAATTCTCTGGTTATGTTGCTGAACATACTGCCTATCA 2083389 Query 279991 TCACGGTGAAGCGTCTCTT 280009 ||| |||||| |||||| Sbjct 2083388 TCATGGTGAACAATCTCTT 2083370 Score = 86.0 bits (94), Expect = 1e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 279080 GATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCTTTATTTCTTACTGAG 279139 ||||||||||| ||||| ||||| | ||||| || |||| | ||| || | || || Sbjct 2084311 GATGATGCAAATTGGGCAGGAGGACAAAAATCAAAATTATGTACATTAATTTTAACAGAA 2084252 Query 279140 GGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATTGGTCGTGATAAATAT 279199 ||||||||||| |||| || | | || || || |||||| | ||||||||| Sbjct 2084251 GGAGATTCTGCAAAATCATTGGCAGTATCGGGGTTGGGAGTAATTGGTAGAGATAAATAT 2084192 Query 279200 GGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 || || ||||| |||||||| ||| | | |||| | | ||| Sbjct 2084191 GGTGTCTTTCCATTAAGAGGAAAATTGTTAAATGTTAGAGAT 2084150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812419849025