Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq21 118 3e-21 seq24 114 3e-20 seq5 102 2e-16 >seq21 Length=1919465 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || ||||| |||||||||||||||||| | || || || | ||| Sbjct 1352394 CAAGACCCTCACTGGTAAAACTATCACTTTGGAAGTGGAAGGATCCGATACCATTGAAAA 1352453 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||| ||||||||||| || ||||| ||| || || ||| | || || || Sbjct 1352454 CGTAAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAACAACGTCTCATTTT 1352513 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || || ||||| ||||| |||||| |||| || ||| | || || || || Sbjct 1352514 TGCCGGTAAACAATTAGAAGACGGAAGAACTTTGTCCGACTATAACATTCAAAAGGAATC 1352573 Query 206364 TACTCTTCACCTTGT 206378 ||||| || || || Sbjct 1352574 AACTCTCCATCTCGT 1352588 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || ||||| || || || ||||| | ||||| ||| |||| ||| Sbjct 1444664 CAAATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGTTCGGAC 1444723 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||| ||| || || ||| Sbjct 1444724 ACCATTGAAAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAACAA 1444783 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| || || || ||||| || || ||| | |||| |||||| || Sbjct 1444784 CGTCTTATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTCTTTCCGACTACAACATC 1444843 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| ||||| || ||||| Sbjct 1444844 CAAAAGGAGTCCACTCTCCATCTTGT 1444869 Score = 109 bits (120), Expect = 1e-18 Identities = 149/207 (72%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || | || || || || |||||| | ||||| ||| | || ||||| || Sbjct 1352617 TTTGTAAAGACATTAACCGGTAAGACCATCACTCTTGAAGTTGAAGGATCCGACACTATC 1352676 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||||||||| || ||||| ||| || || ||| | ||| Sbjct 1352677 GAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAACAACGTCTT 1352736 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| || |||||||| || ||||| ||||| |||||| |||| || ||| | || || Sbjct 1352737 ATCTTTGCTGGAAAGCAATTAGAAGACGGAAGAACTTTGTCCGACTATAACATTCAAAAG 1352796 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || ||||| || || || || ||| Sbjct 1352797 GAATCAACTCTCCATCTCGTATTAAGA 1352823 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||| || ||| | ||||| || | ||| Sbjct 1351939 AAAACTCTTACTGGTAAGACCATCACCTTGGAGGTTGAAGGATCTGATACCATTGAAAAT 1351998 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || ||||| || || || ||| | |||||||| Sbjct 1351999 GTAAAGGCTAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAACAACGTCTTATCTTT 1352058 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || |||||||| || ||||| || | ||||| |||| || ||| | || || ||||| Sbjct 1352059 GCTGGAAAGCAATTAGAAGACGGTCGCACTTTATCCGACTATAACATTCAAAAGGAGTCA 1352118 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 1352119 ACCCTTCAC 1352127 Score = 100 bits (110), Expect = 7e-16 Identities = 143/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || ||||| || || || |||||| | ||||| || | |||||||| | Sbjct 1444898 TTTGTAAAGACCCTCACTGGTAAGACCATCACTCTTGAAGTTGAGGGATCTGACACCATT 1444957 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||||||||| || ||||| ||| || || ||| | || Sbjct 1444958 GAGAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAACAACGTCTC 1445017 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 || || ||||| || || |||||||| || || |||||| | ||||||||| | || || Sbjct 1445018 ATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGGATTACAACATTCAAAAG 1445077 Query 206359 GAGTCTACTCTTCACCTTGT 206378 || || ||||| || || || Sbjct 1445078 GAATCCACTCTCCATCTCGT 1445097 >seq24 Length=3408800 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || | || || || || ||||| |||||||| ||| |||||||| Sbjct 192634 CAAATCTTTGTCAAGACATTGACCGGCAAGACCATCACCTTGGAAGTCGAAGGTTCTGAC 192575 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||||| || ||||| || || || ||| Sbjct 192574 ACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAACAA 192515 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| || || || ||||| || | ||| | ||||||||||| || Sbjct 192514 CGTCTCATCTTTGCCGGTAAACAATTAGAAGACGGCCGAACTCTTTCCGATTACAACATC 192455 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || |||||||| || ||||| Sbjct 192454 CAAAAGGAATCTACTCTCCATCTTGT 192429 Score = 107 bits (118), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || ||||| || || || ||||| | ||||| ||| | || ||||| | Sbjct 192857 TTTTGTCAAGACCCTCACTGGTAAGACCATCACCCTCGAAGTCGAAGGATCCGACACTAT 192798 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 |||| || ||| ||||||||||| || ||||| || || || ||| | || Sbjct 192797 CGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAACAACGTCT 192738 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 |||||| ||||| || || || ||||| || || |||||| | || |||||| |||| || Sbjct 192737 TATCTTTGCCGGTAAACAATTAGAAGACGGCAGAACTTTGTCGGACTACAACATCCAAAA 192678 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 || || ||||| || || || Sbjct 192677 GGAATCCACTCTCCATCTCGT 192657 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||| ||||| || || |||||||| ||| | |||||||| ||||| Sbjct 193078 AAAACATTAACAGGTAAAACCATTACCTTGGAAGTAGAAGGCTCTGACACTATCGAAAAT 193019 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||||| || ||||| || || || ||| | || || ||| Sbjct 193018 GTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAACAACGTCTCATTTTC 192959 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || || || ||||| || || | | ||||||||| |||| || || || Sbjct 192958 GCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGGATTACAACATCCAAAAGGAATCC 192899 Query 206365 ACTCTTCACCTTGT 206378 ||||| || || || Sbjct 192898 ACTCTCCATCTCGT 192885 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || |||||| | ||||| ||| | || ||| Sbjct 192177 CAGATCTTTGTCAAGACATTGACTGGTAAGACCATCACTCTTGAAGTCGAAGGATCCGAC 192118 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| || ||||| || || || ||| Sbjct 192117 ACCATTGAAAACGTTAAGACCAAGATTCAAGACAAGGAAGGTATCCCACCTGATCAACAA 192058 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | |||||||| ||||| || || || || ||||| || || | | ||||||||| | Sbjct 192057 CGTCTTATCTTTGCCGGTAAACAATTAGAGGATGGCAGAACCCTCTCGGATTACAACATT 191998 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || || || || ||||| || ||||| Sbjct 191997 CAAAAGGAATCCACTCTCCATCTTGT 191972 >seq5 Length=4166812 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| || || || || || || || || |||| ||||| ||||| Sbjct 207399 AAAACACTCACAGGTAAGACCATTACCTTAGAGGTAGAGGGTTCCGACACTATCGAAAAC 207458 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||| || || ||| ||| | |||||||| Sbjct 207459 GTCAAGGCTAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAACGTCTTATCTTT 207518 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| ||||| | ||||| || | || | |||| |||||| |||| || |||||| Sbjct 207519 GCCGGTAAGCAACTCGAAGACGGTCGTACCCTCTCCGACTACAACATCCAAAAGGAGTCT 207578 Query 206365 ACTCTTCACCTTGT 206378 ||||| || || || Sbjct 207579 ACTCTCCATCTCGT 207592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820421448025