Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3 132 5e-26 seq5 89.7 5e-13 seq21 87.8 2e-12 >seq3 Length=2750715 Score = 132 bits (146), Expect = 5e-26 Identities = 463/711 (65%), Gaps = 14/711 (2%) Strand=Plus/Plus Query 146680 TTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCA-TGCG 146738 || ||||| || ||||| || || || || | |||||| ||||| ||||| | || Sbjct 2512207 TTGAACGACTGACTTTGGTCGATAAAGGCACCTCTGTCGGCAGCCATATCAATGAGTGTA 2512266 Query 146739 TTTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTC 146798 ||| | || |||||||| | ||||||||| | || | | || || ||||||| Sbjct 2512267 CGTTGACGA-ATCTCCCAAGCCGACTTGTACAGCTCTTTGAGGTCGTCGGGGATACCTTG 2512325 Query 146799 AATGTTTTGAATAGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAAA 146857 | |||||| | || || || |||| || || ||| | |||||||| || | | Sbjct 2512326 GACGTTTTGTACCGACCCACGGTTAGCAATGATT-TGGTTCTTCATTTCGGGAGTCCACA 2512384 Query 146858 GGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCA 146917 ||| ||||| || | | || | || ||||| || ||||||||| |||| Sbjct 2512385 AACCAAGTGCCATGAGATCCTGGAGCAATTGCTTGTTGACGACGGTAAACTCGCCGGCCA 2512444 Query 146918 GCACACGTCTGAGA-TACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAAT 146976 || | | | || || | ||||||||| | || |||||| ||||||| ||||| | Sbjct 2512445 AGAC-CTTGCGCGAGTAAATGTTGCTAGTGTATGGTTCAAAACACTCATTGTTGCCGAGA 2512503 Query 146977 ATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTAC 147036 || || | |||| ||| || |||||| || || | ||| || || || ||||||| Sbjct 2512504 ATCTGTGAGGTGGATGCTGTTGGCATGGGTGCGACGAGCAACGAGTTACGTAGACCGTGT 2512563 Query 147037 GCACGGAT--GTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCC 147094 ||| ||||| || | || ||||||||| | || || || | || Sbjct 2512564 TTGACGATACGTTGT--TTGAGAGCGGCCCAGTCCCAACGGGCAGATGGTTGGACATCCC 2512621 Query 147095 ACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTC 147154 ||||||| | || || | ||| | ||||| || || || || ||| | Sbjct 2512622 ACATGTCAAATTGTAGGATACCTTGGGAAGCGGGCGAACCTGCAAAGGTCTCGTATGGAC 2512681 Query 147155 CGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGA 147214 ||||||||| ||||||| ||| ||| || || | ||||||| ||||||||||| | Sbjct 2512682 CGTCGCGCTCGGCCAATTGACACGATGCGTCAAGGGAAGCATAGTAGATGGTTTCGGCAA 2512741 Query 147215 TTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGG 147274 | | ||||| ||||||| || || || | |||||||| ||| | |||| Sbjct 2512742 TCTCCTTGTTGAGGACGGCGGCAGCTGGTGAGTCAAATGGCATACGGAGAGCGATAAAGA 2512801 Query 147275 CATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCG 147334 | ||||||||||| || || || | |||| | || ||||| |||| | | || Sbjct 2512802 CGTCGGCCAAACCTTGAATTCCAATGCCGGTTGGACGATGACGCATGTTG--GAACGACG 2512859 Query 147335 CGCT--CGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACG 147383 ||| | | || ||| || || ||||| ||||||||||||||||| Sbjct 2512860 AGCTTCTTCGACTGGGTAGAAATTACGGTCAATGATCTTGTTGAGGTTACG 2512910 >seq5 Length=4166812 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| ||||| |||||||||||| | |||||| |||||||| || ||||||| | Sbjct 207577 GACTCCTTTTGGATGTTGTAGTCGGAGAGGGTACGACCGTCTTCGAGTTGCTTACCGGCA 207518 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| || || || || ||||| || || || || || | Sbjct 207517 AAGATAAGACGTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTAGCCTTGACG 207458 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| |||| ||| || || | || | || ||||| || || ||||| Sbjct 207457 TTTTCGATAGTGTCGGAACCCTCTACCTCTAAGGTAATGGTCTTACCTGTGAGTGTTTTA 207398 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 207397 ACGAAGATCTGCAT 207384 >seq21 Length=1919465 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || ||||||||||| |||||| || || | ||||| | |||||||||| Sbjct 1352575 TTGATTCCTTTTGAATGTTATAGTCGGACAAAGTTCTTCCGTCTTCTAATTGTTTACCGG 1352516 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | || ||||| |||||||| || || || ||||| || || ||| || || | Sbjct 1352515 CAAAAATGAGACGTTGTTGATCAGGTGGAATACCTTCCTTGTCTTGAATCTTGGCCTTTA 1352456 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | ||||||| |||||||| | || | ||||||||||| || || | Sbjct 1352455 CGTTTTCAATGGTATCGGATCCTTCCACTTCCAAAGTGATAGTTTTACCAGTGAGGGTCT 1352396 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 1352395 TGACGAAAATTTGCAT 1352380 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | ||||||| ||||||||||| |||||| | || || ||||| Sbjct 1352132 ACCAAGTGAAGGGTTGACTCCTTTTGAATGTTATAGTCGGATAAAGTGCGACCGTCTTCT 1352073 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || || | | |||| ||||| |||||||| || || || ||||| || || | Sbjct 1352072 AATTGCTTTCCAGCAAAGATAAGACGTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGA 1352013 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | ||| | ||||| | || || || | || | || ||| Sbjct 1352012 ATCTTAGCCTTTACATTTTCAATGGTATCAGATCCTTCAACCTCCAAGGTGATGGTCTTA 1351953 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATGACTTATTA 132132 ||||| |||||||||| ||||| |||||| ||| || Sbjct 1351952 CCAGTAAGAGTTTTTACAAAAATTTGCATGTTTTAATA 1351915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611051059000