Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq24 114 1e-20 seq21 100 3e-16 >seq24 Length=3408800 Score = 114 bits (126), Expect = 1e-20 Identities = 149/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 25168 AAACAACA-TGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCG 25226 ||| |||| ||||| | ||||| ||||||||||| || ||| | || || | ||||| | Sbjct 193101 AAAAAACAATGCAAATCTTTGTTAAAACATTAACAGGTAAAACCATTACCTTGGAAGTAG 193042 Query 25227 AAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGC 25286 ||| | || |||||||| | || || || ||| || || || ||||| || | Sbjct 193041 AAGGCTCTGACACTATCGAAAATGTCAAGACCAAGATTCAAGACAAGGAAGGTATCCCAC 192982 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG 25346 | ||||| ||| | ||||||| || ||| |||||| | || |||| ||||| || | Sbjct 192981 CTGATCAACAACGTCTCATTTTCGCCGGTAAACAATTAGAGGATGGTAGAACCCTCTCGG 192922 Query 25347 ATTACAATATTCAAAAAGAATCCAC 25371 ||||||| || ||||| |||||||| Sbjct 192921 ATTACAACATCCAAAAGGAATCCAC 192897 >seq21 Length=1919465 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||| ||||||||||| || | ||||| | ||||| |||| | Sbjct 1352608 ATGCAAATCTTTGTAAAGACATTAACCGGTAAGACCATCACTCTTGAAGTTGAAGGATCC 1352667 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||||||| | || || || ||| || || || ||||| || || ||||| Sbjct 1352668 GACACTATCGAGAATGTCAAGGCCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAA 1352727 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || || | | || || ||| | ||||| | |||| | | ||| || || Sbjct 1352728 CAACGTCTTATCTTTGCTGGAAAGCAATTAGAAGACGGAAGAACTTTGTCCGACTATAAC 1352787 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392 |||||||| ||||| || | ||| | || |||||||| Sbjct 1352788 ATTCAAAAGGAATCAACTCTCCATCTCGTATTAAGATT 1352825 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 25169 AACAA--CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCG 25226 ||||| ||||||| | ||||||||||| ||||| || || | || || | || || | Sbjct 1444197 AACAAATCATGCAAATTTTTGTAAAAACTTTAACTGGTAAGACCATTACCTTGGAGGTTG 1444256 Query 25227 AAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGC 25286 ||| || ||||| || | || || || || || || || ||||| || | Sbjct 1444257 AAGGTTCTGACACTATTGAAAATGTCAAGACCAAGATCCAAGACAAGGAAGGTATTCCAC 1444316 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG 25346 | ||||| ||| | ||||||| | ||| |||||| | ||||| | |||| | | | Sbjct 1444317 CTGATCAACAACGTCTCATTTTTGCCGGTAAACAATTGGAAGACGGCAGAACTTTGTCGG 1444376 Query 25347 ATTACAATATTCAAAAAGAATCCAC 25371 ||||||| |||||||| |||||||| Sbjct 1444377 ATTACAACATTCAAAAGGAATCCAC 1444401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445094260908000