Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3 149 9e-30 seq5 116 5e-20 >seq3 Length=2750715 Score = 149 bits (164), Expect = 9e-30 Identities = 365/543 (67%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 262875 CCGCTGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAG-CATGGCCTGCGCAACTCGT 262933 ||| |||||||||| ||| || | | || ||| || || || || || ||||||| Sbjct 2512602 CCGTTGGGACTGGGCCGCTCT-CAAACAACGTATCGTCAAACACGGTCTACGTAACTCGT 2512544 Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||||| || | |||||| || || | || || ||||| || ||||||| ||| | Sbjct 2512543 TGCTCGTCGCACCCATGCCAACAGCATCCACCTCACAGATTCTCGGCAACAATGAGTGTT 2512484 Query 262994 TCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTG 263052 | || ||| ||| |||||||| ||| ||||| || | | ||||| |||||||| Sbjct 2512483 TTGAAC-CATACACTAGCAACATTTACTCGCGCAAGGTCTTGGCCGGCGAGTTTACCGTC 2512425 Query 263053 GTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGC 263112 |||||| || || || || | |||| | || ||||||| ||||| | Sbjct 2512424 GTCAACAAGCAATTGCTCCAGGATCTCATGGCACTTGGTTTGTGGACTCCCGAAATGAAG 2512365 Query 263113 GACCGGCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCC- 263171 ||| ||||||| | || ||||| || ||| | | |||| | || Sbjct 2512364 AACCAAATCATTGCTAACCGTGGGTCGGTACAAA------ACGTCCA--AGGTATCCCCG 2512313 Query 263172 -CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGAC-CATTGA 263228 ||| ||||| | || | |||| | | |||||| | | |||| | || |||||| Sbjct 2512312 ACGACCTCAAAGAGCTGTACAAGTCGGCTTGGGAGATTCGTCAAC--GTACACTCATTGA 2512255 Query 263229 TATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGC 263288 |||||| |||||| | | ||| | ||||||| || |||||| ||||| ||| | || Sbjct 2512254 TATGGCTGCCGACAGAGGTGCCTTTATCGACCAAAGTCAGTCGTTCAACGTGTTTATTGC 2512195 Query 263289 CGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 ||| || | | | |||| || ||||| ||| || ||| || ||||| Sbjct 2512194 CGAACCAAACTTTGCCAAACTCACCTCTATGCATTTCTACGCCTGGAAGAAGGGTCTCAA 2512135 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 |||||| |||||||| || || || || |||||||| ||||||| |||||||||||||| Sbjct 2512134 GACTGGTATGTACTACCTCCGTACTCGTGCCGCTGCCGACGCCATCCAATTCACCGTCGA 2512075 Query 263409 TCA 263411 ||| Sbjct 2512074 TCA 2512072 Score = 134 bits (148), Expect = 2e-25 Identities = 192/266 (72%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGC-CGCGCCCGCAGAATTCGTCGTGCTTTCT 259977 || || || || |||||||| || ||||| | |||| || | ||| || || || Sbjct 2513750 GCCACCCCAACCCTCTTTAACGCTGGCACCAACTCGCCT-CAAATGTCGAGTTGTTTCCT 2513692 Query 259978 GTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCT 260037 || | ||||||| ||| |||||||| || || ||||||||||||||||| || || || Sbjct 2513691 CGTGCAGATGAAGGACGACTCGATCGAAGGTATTTATGACACGCTCAAGCAATGTGCCCT 2513632 Query 260038 CATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGC 260097 ||| |||||| ||||| || || ||| | |||| |||||| | || ||||| | | Sbjct 2513631 CATTTCCAAGAGTGCCGGTGGTATTGGTATCGCCGTGCACAAGATCCGTGCCGCACGATC 2513572 Query 260098 CTACGTGGCGGGCACCAACGG--CCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155 ||| | || |||||||| | || |||||| | ||||| ||||| || || ||| Sbjct 2513571 CTATATCCGTGGAACCAACGGTACTAG--CAACGGTTTGGTGCCAATGCTACGTGTGTTT 2513514 Query 260156 AACGACACGGCGCGCTACGTCGACCA 260181 ||||| || || || || |||||||| Sbjct 2513513 AACGATACTGCCCGTTATGTCGACCA 2513488 >seq5 Length=4166812 Score = 116 bits (128), Expect = 5e-20 Identities = 143/191 (75%), Gaps = 7/191 (4%) Strand=Plus/Plus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAG 1456181 |||||| || |||||||| ||| ||||| | ||| || | | |||||||| Sbjct 871649 GAAAAAAGCTGACTGGGCTTTGAGATGGATTACCAACT----CCAAGTCG-TTTGCCGAA 871703 Query 1456182 CGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATC 1456240 || | || | |||||||| || || || ||||||||| || |||||||| | ||| Sbjct 871704 CGTTTGGTAGCTTTTGCCGCCGTTGAAGGTATCTTTTTCAGTGGTAGTTTCTGTTCGATC 871763 Query 1456241 TTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300 ||||||||||||||||| || |||||||| |||| || |||| |||||| || ||||| Sbjct 871764 TTTTGGCTCAAGAAGCGTGGTCTCATGCCAGGTC-TCACCTTTTCCAACGAGTTGATCAG 871822 Query 1456301 TCGCGACGAAG 1456311 ||| ||||||| Sbjct 871823 TCGTGACGAAG 871833 Score = 93.3 bits (102), Expect = 6e-13 Identities = 205/298 (69%), Gaps = 11/298 (4%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC 1456506 |||| | || || |||||||||||||| ||||| | | |||| ||| |||| |||| Sbjct 871832 AGGTCTCCATTGCGACTTTGCCTGTCTTCTCTATAACAAGCTCAACAATAAGC--TCGA- 871888 Query 1456507 CGACGTGCCCA---AGCAGATCA-TCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCA 1456562 || | | ||| | |||| |||| || |||||||| || || || ||||||| Sbjct 871889 CGTCAAGACCATCGAATCCATCATTCGT-GACGCCGTCGAATGTGAAAAGGAATTTGTCA 871947 Query 1456563 GCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATT 1456622 || ||| |||| || | ||||| ||||||||| | |||| | | |||||| Sbjct 871948 CTGACTCGTTGCCCGTCGATCTCATTGGCATGAAC-AGTCGTGAAATGTCCAAATACATT 872006 Query 1456623 GAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGG 1456682 ||||| ||| ||||| || || |||| |||| |||| | |||| |||| | | Sbjct 872007 GAATTCTGT-GCCGATCGTCTCCTCGTCTCGCTTGGCTAC-AAGAAAATCTACAATTCTG 872064 Query 1456683 CCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGA 1456740 |||| || || |||||||| |||| || ||| | | ||| | ||||||||||| Sbjct 872065 CCAATCCATTTGATTGGATGGAAATGATTTCACTCATGCGAAAGGCAAACTTTTTCGA 872122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177808788704050