Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20fasciculatum_20[genbank_20GCA_5F000203815.1_202011- 04-13] 25 sequences; 31,019,208 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 179 5e-40 seq3 136 5e-27 >seq5 Length=4166812 Score = 179 bits (198), Expect = 5e-40 Identities = 223/302 (74%), Gaps = 5/302 (2%) Strand=Plus/Minus Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||| |||| ||||| || |||||||| || || ||||| || || |||||||||||| Sbjct 871480 CTATAAGTTTCAGAATGAATATTTTCAATGGCAATTTGAAAACCATAGAAACATCTTGCT 871421 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAA-TTTTCATTCACTATTCCATC 40023 |||| ||||| || || || || | ||| | ||| ||||| || || || ||||| Sbjct 871420 TCAGGTATTTGAACTTCAGA-CATGAACTTGGTGGCAAGGTTTTCGTTGACAATACCATC 871362 Query 40024 ACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT 40083 | || || ||||| |||||||||| || ||||| | ||||| | ||||||| Sbjct 871361 AGAGGCAGCGAAAAAGGCCAATACATTCTTGATAAAGTGACGTTCATTGTCATTCAATTT 871302 Query 40084 ATTC---CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGC 40140 |||| || || |||| ||| ||| | ||| | ||||| ||||||||||| || Sbjct 871301 ATTCTCCCATTCGTTGACATCACTTGCCAAATCAATCTCTTCGGCTGTCCAAAAGCTTGC 871242 Query 40141 CTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCT 40200 |||||||||||| ||||| ||||| ||||| ||||| ||||| || | ||||||||| Sbjct 871241 CTCTGCCTTTTTATACATATTCCAAATATCGGTATATTTAATTGGGAATAGAACAAATCT 871182 Query 40201 AT 40202 || Sbjct 871181 AT 871180 Score = 158 bits (174), Expect = 2e-33 Identities = 214/294 (73%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| ||||| ||||| || || || || | ||| || || ||||| ||||| ||||| Sbjct 871855 CAGGCAAAGTCGCAATGGAGACCTTCGTCACGACTGATCAACTCGTTGGAAAAGGTGAGA 871796 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| ||||||||||| ||||||||||| || | | ||| ||| || ||| Sbjct 871795 CCTGGCATGAGACCACGCTTCTTGAGCCAAAAGATCGAACAGAAACTACCACTGAAAAAG 871736 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTA--ACTTGTATCATTATGTA 39794 || ||||| || || ||||| || || | | || | | ||||| | || | Sbjct 871735 ATACCTTCAACGGCGGCAAAAGCTACCAAACGTTCGGCAAACGACTTGGA--GTTGGTAA 871678 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| || ||||| |||||||| ||||||||||| || || ||||| || ||||||| Sbjct 871677 TCCATCTCAAAGCCCAGTCAGCTTTTTTCTTTACACATGGAATAGTTTCAATTGCATTAA 871618 Query 39855 AGAGATA-ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTA 39907 | | ||| | ||||||||| || ||||| ||||||||| ||||| | |||| Sbjct 871617 ATA-ATACCTTTTTTTCATCTGGATTTTTAATATATGTATCAATTAATAAACTA 871565 >seq3 Length=2750715 Score = 136 bits (150), Expect = 5e-27 Identities = 1094/1757 (62%), Gaps = 42/1757 (2%) Strand=Plus/Plus Query 68404 GTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTT 68463 ||||| || ||||||||||| || || ||||| |||| |||||||||||||| Sbjct 2512111 GTACGGAGGTAGTACATACCAGTCTTGAGACCCTTCTTCCAGGCGTAGAAATGCATAGAG 2512170 Query 68464 GTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATG 68523 || ||||||| | | |||| ||||| ||| | || | ||| |||||||| ||||| Sbjct 2512171 GTGAGTTTGGCAAAGTTTGGTTCGGCAATAAACACGTTGAACGACTGACTTTGGTCGATA 2512230 Query 68524 AAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTC 68583 || || ||||| || || ||||| | || | | |||| |||| |||||| | | Sbjct 2512231 AAGGCACCTCTGTCGGCAGCCATATCAATGAGTGTACGTTGACGAATCTCCCAAGCCGAC 2512290 Query 68584 TTAAAAATCTGTTTGATATCATCTGGAAGGC-TCGTA--TTTTGAATGGATCCACCATCG 68640 || | | || ||||| || || || | | | | | ||||| | || |||| | Sbjct 2512291 TTGTACAGCTCTTTGAGGTCGTCGGGGATACCTTGGACGTTTTGTACCGACCCACGGTTA 2512350 Query 68641 GATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGG 68700 | || ||| ||||| || || | ||||||| || | | | | || Sbjct 2512351 GCAATGATTTGGTTCTTCATTTCGGGAGTCCACAAACCAAGTGCCATGAGATCCTGGAGC 2512410 Query 68701 AGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTG 68760 | ||| || || | ||| || || | || || | || | |||||| || || Sbjct 2512411 AATTGCTTGTTGACGACGGTAAACTCGCCGGCCAAGACCTTGCGCGAGTAAATGTTGCTA 2512470 Query 68761 GTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATA 68820 || |||||||| | | | ||||| || || ||||| || | || ||||| |||||||| Sbjct 2512471 GTGTATGGTTCAAAACACTCATTGTTGCCGAGAATCTGTGAGGTGGATGCTGTTGGCATG 2512530 Query 68821 GGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTC 68880 ||||| || | || || | ||||| ||| | | ||| | ||| ||| | Sbjct 2512531 GGTGCGACGAGCAACGAGTTACGTAGACCGTGTTTGACGATACGTTGTTTGAGAGCGGCC 2512590 Query 68881 CAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTT 68940 || |||||| | |||||||| |||| ||| | || ||||||| || || | Sbjct 2512591 CAGTCCCAACGGGCAGATGGTTGGACATCCCACATGTCAAATTGTAGGATACCTTGGGAA 2512650 Query 68941 GCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCC 69000 || || || | | || || || || || || | || || | || ||| ||| Sbjct 2512651 GCGGGCGAACCTGCAAAGGTCTCGTATGGACCGTCGCGCTCGGCCAATTGACACGATGCG 2512710 Query 69001 TCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGA 69060 || | | | | || || || |||||| ||||| ||| ||||| | || || | Sbjct 2512711 TCAAGGGAAGCATAGTAGATGGTTTCGGCAATCTCCTTGTTGAGGACGGCGGCAGCTGGT 2512770 Query 69061 CTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCG 69120 || ||||| | | | | ||||| | || ||||| || |||| ||||| ||| Sbjct 2512771 GAGTCAAATGGCATACGGAGAGCGATAAAGACGTCGGCCAAACCTTGAATTCCAATGCCG 2512830 Query 69121 ATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCT 69180 | || | ||| | | | || |||| ||||||| | || || ||||| || Sbjct 2512831 GTTGGACGATGACGCATGTTGGAACGACGAGCTTCTTCGACTGGGTAGAAATTACGGTCA 2512890 Query 69181 ATAATTTTATTAAGATTTCGG--ACTACTACTT-TAACCACGTCCTT-TAGTT-TGAGAA 69235 || || || || || || || | | ||| | | || | | ||| || | Sbjct 2512891 ATGATCTTGTTGAGGTTACGTGTAATGATACGGGTGATTTCGGCGAGATGGTTATGGTCA 2512950 Query 69236 AATCAAAT--CGTCC-------ATCTA----TAACAAACATATTCAGTGCTACAGATGCT 69282 ||| || || || | ||| | |||||| | || || | ||||| Sbjct 2512951 AATGAAGCGACGGCCGATGGCGAACTACGCTTGACAAACTTTGGTAGAGCAATCGATGCA 2513010 Query 69283 AGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTA 69342 || || ||||| ||||| || | | | || || || ||||| ||||| ||||| Sbjct 2513011 AGGTTGCAAACGGCTACTTCGTCGGCTGAAGTGTACTGGATAATCTCGGTACAGAGATTG 2513070 Query 69343 CTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAA 69402 |||| ||||| || || || | || || ||||| || || ||||||||||| Sbjct 2513071 GAGCATTGAATAGTGCCAAGGTTCTTTTGGTTGGACTTTTCATTGCAAGCGTCCTTGTAG 2513130 Query 69403 AGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTA 69462 || || | || |||||||| || || || || ||||| || | ||| | | | Sbjct 2513131 AGGATGTATGGGGTACCAGTCTCGATTTGCGAGTCGATGATGGCAAACCAGAGGTCTTGT 2513190 Query 69463 GCATTTA-----TTACGGTCTTGTA-ACGCTTCTCTTTTTCATATTGTGTATATAGC-CG 69515 || || | |||||| || | | | ||| | | | | ||| | | | || Sbjct 2513191 GCCTTGACCACCTTACGGGCTAATCCAGGAGTCTGCTCGTAGGAAAG-GTAGAGATCGCG 2513249 Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| | || || | ||| ||||||||||| ||| |||||||| | ||| || Sbjct 2513250 ---GAACTTGTCGCCGTAGCAATCGGCCAATCCAGGAGCTTCGTTTGGACAAAACAACGA 2513306 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAA 69635 |||| | ||| | | || |||| |||||| ||||||| | ||| || || ||| Sbjct 2513307 CCACTCGGCATTCTGTTCGACACGTTCCATAAAGAGATCGGATACCCAGAGTGCGTAAAA 2513366 Query 69636 GAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCAT 69695 ||| || | || | | ||||| || || || |||||||| ||||||||||| | Sbjct 2513367 GAGGTCACGGGCACGCATCTCTTCTTTACCGTGGTTCTTTTTAAGGTCGAGAAACTCGAA 2513426 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 ||| || || ||||||||||| || || | || | | ||| || || ||| || Sbjct 2513427 AATGTCCGAGTGCCATGGTTCGAGGTAGACAGCAAACGCACCCTTTCTCTTGCCTCCACC 2513486 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 || || | || | |||||| | ||| | || | ||||| || | | ||| || Sbjct 2513487 TTGGTCGACATAACGGGCAGTATCGTTAAACACACGTAGCATTGGCACCAAACCGTTGCT 2513546 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 |||| || |||||| ||||| || | || || || || | | | ||| Sbjct 2513547 AGTACCGTTGGTTCCACGGATATAGGATCGTGCGGCACGGATCTTGTGCACGGCGATACC 2513606 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 || || || || | || || || || ||||| | || | |||||||| ||||| || Sbjct 2513607 AATACCACCGGCACTCTTGGAAATGAGGGCACATTGCTTGAGCGTGTCATAAATACCTTC 2513666 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || || || |||| | | || ||||| || ||||||||| | | || || Sbjct 2513667 GATCGAGTCGTCCTTCATCTGCACGAGGAAACAACTCGACATTTGAGGCGAGTTGGTGCC 2513726 Query 69996 CGCATTAAATAATGTAGGAG----ATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGT 70051 || ||||| | || || | |||||| | ||| ||| || | | | || Sbjct 2513727 AGCGTTAAAGAGGGTTGGGGTGGCATGCGTAAAGTAACGGTTT----GACAATTGGTCGT 2513782 Query 70052 ATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 | || ||||| || | || || || ||| | || || || | | ||||||||||||| Sbjct 2513783 ACGTGTCAATGGCAGCGTCAATGTCGTCACCG-TGGATACCAAGTGAGACACGCATCAAC 2513841 Query 70111 ATATGCTGAGGTCGTTC 70127 | || || || ||||| Sbjct 2513842 AAGTGTTGGGGACGTTC 2513858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908585341000